PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496306

Common Name

ARALYDRAFT_496306

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 299aa MW: 33186.6 Da PI: 5.3019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496306	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	10	31	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C++sFs+ L H+r H 496306 10 TCQICKRSFSNGKALGGHMRAH 31 6*******************98 PP
2	zf-C2H2	11.8	0.00074	268	290	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H + H 496306 268 YECQICNRVFASGQALGGHKKIH 290 99**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.4	9	31	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.055	9	36	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.92E-5	10	34	No hit	No description
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-7	11	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.65E-7	222	290	No hit	No description
SMART	SM00355	0.28	222	244	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.598	222	249	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.9E-9	222	245	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	224	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.029	268	290	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	268	290	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.9E-11	268	291	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	270	290	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MYSLLKATKT CQICKRSFSN GKALGGHMRA HTRKLSAGSS SSTGSVTPSL RPCNNLGASF 60 RPPETVLVRS VHTSEVVGGP KPDLNTEGEQ QITAKRKIVV VDLEEEDSTE SESDITIEES 120 ALCLLKMKSD PTEYFQNPKS IDSLVSTRKK KDTEKHIVID SDDEYVAEDE DEDEDDEDED 180 IKFLTSDMGD LTGDSDEDED DYDDENAYYG GKERRGKKQS KYTCDICGQV LHSYQALGGH 240 RTSHRNKRLK ISDKNHSAED GPVVRRSYEC QICNRVFASG QALGGHKKIH YTFHAPPK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496306

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016887	0.0	AB016887.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871892.1	1e-174	zinc finger protein ZAT9
TrEMBL	D7MV23	0.0	D7MV23_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.8__2122__AT5G61470.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14171	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61470.1	1e-112	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	496306
Entrez Gene	9302512