PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496151 | ||||||||
Common Name | ARALYDRAFT_496151, ARALYDRAFT_497236 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 481aa MW: 53022 Da PI: 6.6597 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.3e-17 | 154 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g 496151 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 203 78*******************......55***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.97E-11 | 154 | 210 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 154 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-15 | 154 | 211 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 155 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 155 | 211 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 155 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MLDLNLDVDS AESTQNERDS VTVEGVSLNQ MDESVTSNSS VVNAEASSCI DGEDELCSTR 60 TVKFQFEILK GGEEEEEEED DDERSAVMMT KEFFPVAKGM NFMDSSAQSS RSTVDISFQR 120 GKQGGDFGAD AARVMQPPSQ PVKKSRRGPR SKSSQYRGVT FYRRTGRWES HIWDCGKQVY 180 LGGFDTAHAA ARAYDRAAVK FRGLEADINF IISDYEEDLK QMANLSKEEV VQVLRRQSSG 240 FSRNNSRYQG VSLQKIGGWG AQMEQFHGNM ASDKAAIQWN GREAASLIEP HASRMIPEAA 300 NVKLDLNLGI SLSLGDGPKQ KERALRLHHV PNITVCGRNI MMENHMAAAA CDTPFNFLKR 360 GSDHLNNRHS LPSAFFSPME RTPEKGHMLR SHQSFPARTW QGHDQSSGGT AVAATAPPLF 420 SNAASSGFSL SATRPPSSIA TPHPSQPFLN MNQPGLYVIH PSDYTSQHHH NLMNRPQPPP 480 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00616 | PBM | Transfer from AT5G60120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496151 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT001916 | 0.0 | BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874049.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE2 isoform X2 | ||||
Refseq | XP_020888751.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE2 isoform X2 | ||||
Swissprot | Q9LVG2 | 0.0 | TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2 | ||||
TrEMBL | D7MT67 | 0.0 | D7MT67_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.71__6__AT5G60120.1 | 0.0 | (Arabidopsis lyrata) | ||||
STRING | fgenesh2_kg.8__1967__AT5G60120.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12836 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60120.1 | 0.0 | target of early activation tagged (EAT) 2 |
Link Out ? help Back to Top | |
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Phytozome | 496151 |
Entrez Gene | 9299031 |