PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496077
Common NameARALYDRAFT_496077
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 616aa    MW: 70498.2 Da    PI: 5.3863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496077genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.64.8e-1242296031374
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
             l++lL++cA+av+s d+++a+  L++++ ++s++gd +qRla+yf+eAL+ar+++  ++ +++ +p+s+ts   +++ l+a+klf++++Pi+   +++aN+ I
  496077 229 LRSLLTQCAQAVASFDQRRATDKLKEIRSHSSSNGDGTQRLAFYFAEALEARITGnISPPVSNPFPSSTTS---MVDILKAYKLFVHTCPIYVTDYFAANKSI 328
             6899***************************************************6777888777777777...***************************** PP

    GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
             +e + +++++Hi+Df++ +G+QWp+Ll+aL+++p+gpp+lR+Tg++ p++g   ++++eetg+rL++f+++++vpfefn+ +ak++e+++l+eL ++p+E+++
  496077 329 YELAMKATKLHIVDFGVLYGFQWPCLLRALSKQPGGPPMLRVTGIELPQAGfrPSDRVEETGRRLKRFCDQFNVPFEFNF-IAKKWETISLDELMINPEETTV 430
             **************************************************9*****************************.7********************* PP

    GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegae 304
             Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+  ++r+ +Erell r++++v++cegae
  496077 431 VNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDeyKNRALLERELLVRDAMSVISCEGAE 533
             ***********************************************************************99998899************************ PP

    GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
             r++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + ++++++++++gWk+r ++++S+W+
  496077 534 RFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 603
             *****************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.422203583IPR005202Transcription factor GRAS
PfamPF035141.6E-121229603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNLES GNNLFPNFHE TQNQSSPNDS PPTVCLDNSP  60
VLKYINDMLM DEEDFVGESR DLEALQAAER SFYEILQQQS PESDQNTSSS DQNSGDQDFC  120
FPSTTTSLTD SSALVSSGES RRKYRYRNDE EDDLENNRRN KQPAIFVSEM EELAVKFEHV  180
LLVCKTNQEE EEEEEKESAI TKQSQPHRAG RPKGSSNKSK TQKTNSVDLR SLLTQCAQAV  240
ASFDQRRATD KLKEIRSHSS SNGDGTQRLA FYFAEALEAR ITGNISPPVS NPFPSSTTSM  300
VDILKAYKLF VHTCPIYVTD YFAANKSIYE LAMKATKLHI VDFGVLYGFQ WPCLLRALSK  360
QPGGPPMLRV TGIELPQAGF RPSDRVEETG RRLKRFCDQF NVPFEFNFIA KKWETISLDE  420
LMINPEETTV VNCIHRLQYT PDETVSLDSP RDTVLKLFRD INPDLFVFAE INGMYNSPFF  480
MTRFREALFH FSSLFDMFDT TIQAEDEYKN RALLERELLV RDAMSVISCE GAERFARPET  540
YKQWRVRILR AGFKPATISK QIMKEAKEIV RKRYHRDFVI DSDNNWMLQG WKGRVIYAFS  600
CWKPAEKFTN NHVNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-452126042380Protein SCARECROW
5b3h_A3e-4523560424379Protein SCARECROW
5b3h_D3e-4523560424379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAY0350010.0AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankAY0629420.0AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881159.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLD7MSF00.0D7MSF0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1893__AT5G59450.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]