PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495863
Common NameARALYDRAFT_495863
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 344aa    MW: 37399.8 Da    PI: 6.2326
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495863genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-071957339
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
              +r C+ +++  +  fC+ ++ +lC +C + +H+   H++
    495863 19 ARSCDACKSVTAAVFCRLDSAFLCISCDTRIHSFtrHER 57
              578******99*********************6577876 PP
2zf-B_box28.63e-0958103342
  zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
    495863  58 VWVCDVCEQAPAAVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103
               689*****************************66999999999986 PP
3CCT70.15.8e-24274317144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  495863 274 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 317
             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-61760IPR000315B-box-type zinc finger
PROSITE profilePS5011910.041760IPR000315B-box-type zinc finger
PfamPF006431.0E-52058IPR000315B-box-type zinc finger
CDDcd000215.82E-82060No hitNo description
PROSITE profilePS5011910.69456103IPR000315B-box-type zinc finger
PfamPF006433.3E-757103IPR000315B-box-type zinc finger
CDDcd000211.08E-859103No hitNo description
SMARTSM003363.4E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.817274316IPR010402CCT domain
PfamPF062035.2E-18274316IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRLDSAF LCISCDTRIH SFTRHERVWV  60
CDVCEQAPAA VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFDSA ETAVAKISPS  120
STFGILGSST TVDLTAVPVM GDDLGLCPCS SEFMFADFDR LIDFEFPNSF NHPSNNDAGG  180
DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT  240
NNSVSEISIP FNRSMITTST AASTGDHQTS SMDREARVLR YREKRKNRKF EKTIRYASRK  300
AYAESRPRIK GRFAKRTETE NDDVFLSHVY ASAATQYGVV PTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap495863
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0884320.0AY088432.1 Arabidopsis thaliana clone 6639 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871802.10.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLD7MNU50.0D7MNU5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1679__AT5G57660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]