PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495709
Common NameARALYDRAFT_495709
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 467aa    MW: 51217.9 Da    PI: 5.4799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495709genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000996284123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             + C+ Cgk+F +   L  H r H
   495709 62 HICGECGKRFVSGKALGGHKRIH 84
             68**************9999998 PP
2zf-C2H210.90.0015115135323
              ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
              C  C k F++   L  H+r H
   495709 115 CCVCYKKFTSMKALYGHMRFH 135
              *******************99 PP
3zf-C2H211.40.001319341123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C  C+ksFs+   L  H  +H
   495709 319 HVCVTCNKSFSSYQALGGHRASH 341
              79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-55985IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.5E-860135No hitNo description
PfamPF139126.5E-86284IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3236289IPR007087Zinc finger, C2H2
SMARTSM003550.226284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM003554.6113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725113135IPR007087Zinc finger, C2H2
PfamPF139120.003115136IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576677.91E-8319341No hitNo description
PfamPF139122.2E-10319343IPR007087Zinc finger, C2H2
SMARTSM003550.38319341IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577319346IPR007087Zinc finger, C2H2
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
SuperFamilySSF576677.91E-8383410No hitNo description
PROSITE profilePS501579.494388410IPR007087Zinc finger, C2H2
PfamPF139124.8E-12388411IPR007087Zinc finger, C2H2
SMARTSM003550.36388410IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280390410IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEHLRGYKTN CGFSLGKPRF GSMKVKIPRI QPEEEDDHGA KSMDLEEGDV EEVEEEEEEK  60
KHICGECGKR FVSGKALGGH KRIHALETRK FSMMRPKMVS GMVGRSERGD LEVACCVCYK  120
KFTSMKALYG HMRFHPDRGW KGVLPPPLPH PLGNSSSSTL SIDDHDDEFI SSDYDDDDFD  180
DDDDENSELW DSNLELENVV EPIKGWSTKG KRGSRSALKF DELDLKDPSP EDVKDIDDAN  240
GLLFLATTAE AAANLNVAET SASHSVEEKY LEMVKKRKKK QKRLSEMEKE STSTQDHQLD  300
QVVVAAEEGG GAGARENSHV CVTCNKSFSS YQALGGHRAS HNKVKILENH QARANAEASL  360
LGTEAITTGL ASAQGSNTSL SSSHNGDHVC NICHKSFSTG QALGGHKRCH WTGPVSTEAA  420
TAAPTSAPTA PAGASSSQVT ETVQEVKKLK RKFLEFDLNE LPPNEEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274278KKRKK
2274282KKRKKKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap495709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230290.0AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankAB4937940.0AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879471.10.0zinc finger protein ZAT4
TrEMBLD7ML890.0D7ML89_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__1525__AT5G56200.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.10.0C2H2 family protein