PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495319
Common NameARALYDRAFT_495319
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 651aa    MW: 70500.9 Da    PI: 5.191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495319genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.65.2e-1072716502374
    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
             +++++e+A+a+++g++e a+++Lar+s+  + ++++ ++l+ +++ AL++r+++  ++l+     s+++e   +e+l +++l++e+sP++k+++ +aN aIl+
  495319 271 RQTVMEIATAIAEGKTEIATEILARVSQSPNLERSSEEKLVDFMVTALRSRINQ-AESLS-----SPARELYRKEHLISTQLLNELSPCYKLGFTAANLAILN 367
             6889*************************************************9.33333.....333334488999************************** PP

    GRAS 105 avege....ervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
             a+ ++     ++H+iDfdi++G+Q+++Llq+L++R++g      +p ++iT+v ++ +g       +e+l+ +g+ L+++ ++lg++++fnv+++ rl dl+ 
  495319 368 AAGNNdagmMMLHVIDFDIGEGGQYVNLLQTLSTRRNGknqnqnSPVVKITAVTNNVYGflvdggGEERLKVVGDLLSQLGNRLGISVSFNVVASLRLGDLSR 470
             **9998877788*********************999444455559**********99889****99**************************8888******* PP

    GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
             e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al+ds+e+++p+ +++r+kvE+  +gr++
  495319 471 ESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLDSVESTVPSLNSDRVKVEEG-IGRKL 572
             *************************************************************************************************.***** PP

    GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
              n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+  +      +  g++v+e++g +++gW++r+L ++SaWr
  495319 573 INAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIADRLNNGNL--AHPGFTVKEDNGGVCFGWMGRTLAVASAWR 650
             ***************************************987766443..356**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.869244632IPR005202Transcription factor GRAS
PfamPF035141.8E-104271650IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MESGFSGGGG GSDFHGGGGR SIPGGPGTVI NVGNNNPQPT YRNQIPGIFL DQIGNRVSAG  60
NGFAGKRTLA DFQAAQQYQQ QQQQQQQQQQ PFYNQAALNA FLLRSVKPRN YQNFQSPSPM  120
IDLTSVNDMS LFGGSGSSQR YGSPVLKSQT QQQQSNFGLF GGIRMGYGSG NNNNMTLTGV  180
PCIEQVQHNR VHESENMLNS LRELEKQLLD DDDESGGDDD VSVITNSNSD WIQNLVTPNP  240
NPNPVLSFSP SSSSSSSSLS TASTTTSVCS RQTVMEIATA IAEGKTEIAT EILARVSQSP  300
NLERSSEEKL VDFMVTALRS RINQAESLSS PARELYRKEH LISTQLLNEL SPCYKLGFTA  360
ANLAILNAAG NNDAGMMMLH VIDFDIGEGG QYVNLLQTLS TRRNGKNQNQ NSPVVKITAV  420
TNNVYGFLVD GGGEERLKVV GDLLSQLGNR LGISVSFNVV ASLRLGDLSR ESLGCDPDEP  480
LAVNLAFKLY RVPDESVCTE NPRDELLRRV KGLKPRVVTL VEQEMNSNTA PFLGRVSESC  540
ACYGALLDSV ESTVPSLNSD RVKVEEGIGR KLINAVACEG IDRIERCEVF GKWRMRMSMA  600
GFELMPLSEK IADRLNNGNL AHPGFTVKED NGGVCFGWMG RTLAVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3026965011375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap495319
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0363050.0AF036305.1 Arabidopsis thaliana scarecrow-like 8 (SCL8) mRNA, partial cds.
GenBankAP0003780.0AP000378.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T4M5.
GenBankAY0996860.0AY099686.1 Arabidopsis thaliana SCARECROW transcriptional regulator-like (At5g52510) mRNA, complete cds.
GenBankAY1288680.0AY128868.1 Arabidopsis thaliana SCARECROW transcriptional regulator-like (At5g52510) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868578.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLD7MS570.0D7MS57_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1135__AT5G52510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8