PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 495243 | ||||||||
Common Name | ARALYDRAFT_495243 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 175aa MW: 20130.4 Da PI: 9.2181 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.8e-15 | 3 | 54 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e Er+RR+++ s ++ Lr+llP + ++K s ++ + +Av+YIk+Lq 495243 3 KMMHRETERQRRQEMASLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 54 789*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.354 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-15 | 3 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-11 | 3 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-10 | 3 | 58 | No hit | No description |
Pfam | PF00010 | 5.1E-12 | 3 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-7 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEKMMHRETE RQRRQEMASL YASLRSLLPL HFIKGKRSTS DQVNEAVNYI KYLQRKIKEL 60 SVRRDYLMVL SRGSFLGSSN DDSKEEVEMM SRKNHVVVRQ CLVGVEIVFS SRCCGGQPRF 120 SSVLQVLSEH GLCLLNSISS IVDDRLIYTI QAEVNDMALM IDLAELEKRL IRMK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 495243 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317430 | 0.0 | AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24. | |||
GenBank | BT010952 | 0.0 | BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds. | |||
GenBank | BT011640 | 0.0 | BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020880438.1 | 1e-123 | transcription factor bHLH36 | ||||
Swissprot | Q9FLI1 | 1e-115 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | D7MRI8 | 1e-123 | D7MRI8_ARALL; Basix helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.8__1059__AT5G51780.1 | 1e-123 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-118 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 495243 |
Entrez Gene | 9300207 |