PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 495114 | ||||||||
Common Name | ARALYDRAFT_495114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 202aa MW: 21786.2 Da PI: 4.2679 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.1 | 1.5e-54 | 34 | 133 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 ql+++w++q+e+++dfkn++lPl+rikki+kad+dv+m+saeaP+l++kace+fi++lt+rswl+aeenkr+tl+ksdi++av++++++dfl+d+vp+d+ 495114 34 QLRNYWIEQMETVSDFKNRQLPLTRIKKIMKADPDVHMVSAEAPILFAKACEMFIVDLTMRSWLNAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDD 133 89************************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.85E-30 | 4 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-18 | 53 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.5E-33 | 54 | 131 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MENNNNNGDN MNDGNHQPPP SYSQLPPMAS SNPQLRNYWI EQMETVSDFK NRQLPLTRIK 60 KIMKADPDVH MVSAEAPILF AKACEMFIVD LTMRSWLNAE ENKRHTLQKS DISNAVASSF 120 TYDFLLDVVP KDDGIATADP GFVAMPHPDG GGVPQYYYPP GVVMGTPVAG SGMYAPPQAW 180 PAAAGDGEDE GADNEGNGGG N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-38 | 41 | 131 | 5 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 495114 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025619 | 0.0 | AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10. | |||
GenBank | BT014783 | 0.0 | BT014783.1 Arabidopsis thaliana At5g50480 gene, complete cds. | |||
GenBank | BT015006 | 0.0 | BT015006.1 Arabidopsis thaliana At5g50480 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865810.1 | 1e-148 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q9FGP7 | 1e-123 | NFYC6_ARATH; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | D7MQ85 | 1e-147 | D7MQ85_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__930__AT5G50480.1 | 1e-148 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50480.1 | 1e-101 | nuclear factor Y, subunit C6 |
Link Out ? help Back to Top | |
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Phytozome | 495114 |
Entrez Gene | 9301884 |
Publications ? help Back to Top | |||
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