PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494576
Common NameARALYDRAFT_494576
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-other
Protein Properties Length: 1685aa    MW: 189208 Da    PI: 5.0661
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494576genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-181672157
              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
              ++kR   t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k
    494576 16 KSKRKMKTAAQLEVLENTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 72
              679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-17372IPR009057Homeodomain-like
SuperFamilySSF466894.71E-151172IPR009057Homeodomain-like
PROSITE profilePS5007116.3421373IPR001356Homeobox domain
SMARTSM003891.7E-161577IPR001356Homeobox domain
CDDcd000861.59E-131673No hitNo description
PfamPF000468.5E-161672IPR001356Homeobox domain
PROSITE profilePS5082716.328515574IPR018501DDT domain
SMARTSM005714.1E-23515574IPR018501DDT domain
PfamPF027914.4E-17516571IPR018501DDT domain
PfamPF050661.1E-15697765IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.2E-6900938IPR028942WHIM1 domain
PfamPF156131.0E-1210731145IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1685 aa     Download sequence    Send to blast
MEGGSEKTTP EGGESKSKRK MKTAAQLEVL ENTYAAEPYP SEAIRADLSV KLNLSDRQLQ  60
MWFCHRRLKD RKSTTPSKRH RKELVTPTAV ESSKPAVNAG DLVAGNELDS RRAARGGGGS  120
GSGGVTVVRR FNEPSSAEVR AIGYVEAQLG ERLRDNGPIL GMEFDPLPPG AFGMPIEMPS  180
HRKAPRQAFE TNIYVRSDVK PIKDHVRPIR EYQFIPELPS SRTDHSERVS PSHHFGVPLD  240
GSVMRASAVS AGHRDDYKIS PQIPNLNLAT HQGKPGHVYS PNLAEYDSPY QKSYVDTAAH  300
VHEDPFVKSE RDFGNEDEDD DALQLERQRK NEEARIAREV EAHEKRIRRE LEKQDMLRRK  360
REEQIRKEME RQDRERRKEE ERLLREKQRE EERYLKEQMR ELQRREKFLK KETIRAEKMR  420
QKEEMRKEKE VARLKAANER AIARKIAKES MELIEDERLE LMEVAALTKG LPSMLALDFE  480
TLQNLEEYRD KQVLFPPTSV RLKKPFAVKP WNGSDENVAN LLMVWRFLIT FADVLGLWPF  540
TLDEFAQAFH DYDPRLMGEI HIVLLKTIIK DIEGVARTLL TGVGANQNTA SNPGGGHPHV  600
VEGAYAWGFD IRSWRRNLNV FTWPEILRQL ALSAGLGPQL KKMNIKTVSV HDDNEANNSE  660
NVIVNLRKGV AAENAFAKMQ ERGLSNPRRS RHRLTPGTVK FAAFHVLSLE GEKGLTILDV  720
AEKIQKSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST YCVRASYRKD AGDAETIFAE  780
ARERIRAFKS GVTDVEDVDD VERDEDSESD VGDDPEVDLN LKKEDPNALK IENLVGVEPV  840
LENGKLDTMP MKTELGLPLT PSLPEDMKDE KRDDILVEQS LEDAVANGED SACFDESKLG  900
EQWVQGLVEG DYANLSSEER LNALVALIGI AIEGNTIRIA LEERLEVASA LKKQMWGEVQ  960
LDKRWKEESL IRANYLSYPT AKPGLNIATP ASGNQESYSA DVTPISSQDP LSLPQIDVNN  1020
VIAGPSLQLQ ENVPGMENLQ YQQQQGYTAD RERLRAELKA YIGYKAEELY VYRSLPLGQD  1080
RRRNRYWRFS ASASRNDPGC GRIFVELQDG RWRLIDSEEG FDYLVKSLDV RGVRESHLHF  1140
MLLKIEASFK EAVRRSVEAN PGLSSISSSM DSDTAEISTT FKIELGDSNA IERCSVLQRF  1200
QSFEKWMWDN MLHPGALSAY KYGAKQSSPL FRICRICAGL HFVEDICCPS CGQMHAGPDI  1260
AELCFAEQVA QLGDILRGGD IGFILRSSIS SPLRIRLLKV QLALVEASLP PEGLEAFWTE  1320
NLRKSWGMKL MSSSSPEELN QVLTTLEAAL KRDFLSSNFE TTSELLGLQV EALANDFTCG  1380
VNVLPWIPKT TGGVALRLFE FDSSIVYTPD QNKDPLKDKE SEDFVGLETN FVRNVQEKDV  1440
METPVQVAYT QEENWTDPGL GGVSSSGRGG RPPRGRGRPR SRGNGKKPAV SGRPPRGAAN  1500
SNGETMLRPR AQPRGGRKNG RRIGTKGRKR PTKGTLGISN EVGGSRAKEV AVTAKTSLPD  1560
NDDDWIDTPE LQDDDGEASS SGRSFQYEDY DDDVMAPIDD FDGGGESSKL VGRGEFSLHS  1620
DDEYEEEEEE EDMNMKMDVN VVDDEDEDYI NDDSYGREQP VISTRKRFKF EDPDLTSSSS  1680
SDFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115161530RKNGRRIGTKGRKRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap494576
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428930.0AY042893.1 Arabidopsis thaliana Unknown protein (MLN1.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882322.10.0homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLD7MN210.0D7MN21_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__392__AT5G44180.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator