PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494310
Common NameARALYDRAFT_494310
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 328aa    MW: 36563.4 Da    PI: 7.041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494310genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-1586137155
             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +r++h ++Er+RR+++N+ ++ Lr+l+P++    + K + a+i+  A+++Ik+L+
  494310  86 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAHKGDQASIVGGAIDFIKELE 137
             79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1684154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1384139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-1384140No hitNo description
PROSITE profilePS5088815.69485136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1286137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-991142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTLEALSANG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISTKTIPEIP HQEPPPPRQP  60
PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ MNQHLSVLRS LMPQPFAHKG  120
DQASIVGGAI DFIKELEHKL LSLEAQKLHN AKSNQSVTSS TSQDSNGEQE NPHQPSSLSL  180
SQFFLHSYDP GQENRNGSTS SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTMATARPP  240
QLSKLVSALQ SLSLSILHLS VTTLDTYVIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE  300
EEPFCCSPMS ELPFDFSLNH SNATHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672KKRRRRK
26673KKRRRRKP
36772KRRRRK
46874RRRRKPR
58697RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap494310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216130.0AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02.
GenBankBT0256630.0BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865169.10.0transcription factor bHLH71
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLD7MRB60.0D7MRB6_ARALL; BHLH071
STRINGfgenesh2_kg.8__126__AT5G46690.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-180beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]