PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 494254 | ||||||||
Common Name | ARALYDRAFT_494254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24884.7 Da PI: 5.4633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 99 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae Aa a+++a+ +++g 494254 99 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEAAALAYDRAAFRMRG 149 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.10E-23 | 98 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 98 | 157 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-14 | 99 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-23 | 99 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-40 | 99 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.474 | 99 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MYGQCDIESD YALLESITRH LLGGGENDLR LNESTPSSCF TDLPLKENDS EDMLVYGLIK 60 DAFHCDTSSS DLSCLFDFPA VKVEPTENFA VVEEKPKKHY RGVRQRPWGK FAAEIRDPAK 120 NGARVWLGTF ETAEAAALAY DRAAFRMRGS RALLNFPLRV NSGEPDPVRI TSKRSSSSSS 180 SSSSSSSSSS SENGKLKRRR KAENLTSEVK CEVGEETRVD ELLVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-41 | 98 | 164 | 4 | 70 | ATERF1 |
3gcc_A | 2e-41 | 98 | 164 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 494254 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008104 | 1e-158 | AB008104.1 Arabidopsis thaliana AtERF-2 mRNA for ethylene responsive element binding factor 2, complete cds. | |||
GenBank | AB018117 | 1e-158 | AB018117.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5. | |||
GenBank | AK175151 | 1e-158 | AK175151.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL21-57-E18. | |||
GenBank | AK175229 | 1e-158 | AK175229.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2, complete cds, clone: RAFL21-65-J18. | |||
GenBank | AK176532 | 1e-158 | AK176532.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-05-B19. | |||
GenBank | AK176606 | 1e-158 | AK176606.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-13-E16. | |||
GenBank | AK176825 | 1e-158 | AK176825.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-38-F08. | |||
GenBank | BT024470 | 1e-158 | BT024470.1 Arabidopsis thaliana At5g47220 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-158 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871816.1 | 1e-141 | ethylene-responsive transcription factor 2 | ||||
Swissprot | O80338 | 1e-135 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | D7MPV8 | 1e-163 | D7MPV8_ARALL; ATERF-2/ATERF2/ERF2 | ||||
STRING | fgenesh2_kg.8__70__AT5G47220.1 | 1e-164 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-125 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | 494254 |
Entrez Gene | 9301208 |
Publications ? help Back to Top | |||
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