PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 494163 | ||||||||
Common Name | ARALYDRAFT_494163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 196aa MW: 22340.5 Da PI: 7.3733 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 147.4 | 3.1e-46 | 34 | 131 | 2 | 98 |
NF-YC 2 lksfwekqiekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 lk+fw++q+e+ +f+ ++ lPl+r++kilk++++vk+is+++P+l+skace+fileltlr+w+++++++r+t++++di++av+++ ++dfl+d+vp 494163 34 LKVFWNNQREQLGNFAgQTYLPLSRVRKILKSNPEVKKISCDVPALFSKACEYFILELTLRAWMNTQSCTRQTIRRCDIFQAVKNSGTYDFLIDHVPF 131 99*************98999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-24 | 42 | 150 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-15 | 53 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.9E-27 | 54 | 130 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MRRPKSSRIR MEPVRSNHPA TSKNEGTSSL DTALKVFWNN QREQLGNFAG QTYLPLSRVR 60 KILKSNPEVK KISCDVPALF SKACEYFILE LTLRAWMNTQ SCTRQTIRRC DIFQAVKNSG 120 TYDFLIDHVP FGPHCVVHQG VPTPAEMILP DMNVPIDMNE TEQENLTEEC SINNRGFDLN 180 SDLQVVFFEL LFLQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 1e-23 | 54 | 130 | 42 | 118 | HapE |
4g92_C | 1e-23 | 54 | 130 | 42 | 118 | HapE |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 494163 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493768 | 0.0 | AB493768.1 Arabidopsis thaliana At5g38140 mRNA for hypothetical protein, partial cds, clone: RAAt5g38140. | |||
GenBank | BT021919 | 0.0 | BT021919.1 Arabidopsis thaliana At5g38140 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874803.1 | 1e-138 | nuclear transcription factor Y subunit C-10 | ||||
Swissprot | Q58CM8 | 1e-112 | NFYCA_ARATH; Nuclear transcription factor Y subunit C-10 | ||||
TrEMBL | D7MK40 | 1e-145 | D7MK40_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__3596__AT5G38140.1 | 1e-145 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16422 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 1e-113 | nuclear factor Y, subunit C12 |
Link Out ? help Back to Top | |
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Phytozome | 494163 |
Entrez Gene | 9304874 |
Publications ? help Back to Top | |||
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