PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494014
Common NameARALYDRAFT_494014
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 328aa    MW: 35641.2 Da    PI: 8.6342
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494014genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.38.6e-3450106459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  ++YkeClkNhAa+lGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRr++++
       494014  50 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsSDPTSLKCAACGCHRNFHRRDPDN 106
                  68**************************9999899******************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.7E-2851104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-3151103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1752119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.62952103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.28E-18182256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28184256IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-25195252IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDMTPTITTT TTTPKSPEPE SETPTRIQPA KPISFSNGII KRHHHHPLLF TYKECLKNHA  60
AALGGHALDG CGEFMPSPSS ISSDPTSLKC AACGCHRNFH RRDPDNNNDS SPIHPPPSTA  120
VEYQPHHRHH PPPPLPPPPP RSPNSASPPP ISSSYMLLSL SGTNNNNNNL ASFSDLNFPG  180
GNNHHHHQHT LHGSRKRFRT KFSQFQKEKM HEFAERLGWK MQKRDEDDVR DFCRQIGVDK  240
SVLKVWMHNN KNTFNRRDLA GNEIRKIDNG GGNHTPILTG EINNNNNGHH GGGGGELHHS  300
VSSGGGGGFD SDSGGANGGN VNGSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-201942531675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00536DAPTransfer from AT5G39760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap494014
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168760.0AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankAK2284840.0AK228484.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-09-C01.
GenBankAY0910340.0AY091034.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds.
GenBankAY1173470.0AY117347.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872961.10.0zinc-finger homeodomain protein 10
SwissprotQ9FIW91e-130ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBLD7MJI50.0D7MJI5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__3447__AT5G39760.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.11e-102homeobox protein 23
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]