PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493837
Common NameARALYDRAFT_493837
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 607aa    MW: 68912.6 Da    PI: 7.0923
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-094064431954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
    493837 406 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 443
               554459******************************88 PP
2BELL106.12.2e-34264335172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             e++elqk+kakLls+lee+++rY +y+eq+++ +++Fea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  493837 264 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGVGAAEIYTALASRAMSRHFRCLKDGLVGQI 335
             679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075267.9E-43189331IPR006563POX domain
SMARTSM005744.5E-71195333IPR006563POX domain
PROSITE profilePS5007112.017384447IPR001356Homeobox domain
SMARTSM003895.6E-9387451IPR001356Homeobox domain
CDDcd000861.46E-10387448No hitNo description
SuperFamilySSF466893.08E-17388455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-28390454IPR009057Homeodomain-like
PfamPF059208.0E-18404443IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH HYNHQIFGSN SNMGMMIDFS  60
KQQQIRMTSG PDHHHHHHQT SGGTNQNQLL EDSSSTMRLC NVNNDFPSEV NDERPPQRPS  120
QGLSLSLSSS NPTSISLQSF ELRPQQQQQG YSGKSTHHQN LQHTQMMMMM MNSHHQNNNN  180
NNHHHQFQIG SSKYLSPAQE LLSEFCSLGV KESDEEVMMM KHKKKQKGKQ QEEWDTSHHN  240
NNDQHDQSAT TSSKKHVPPL HSLEFMELQK RKAKLLSMLE ELKRRYGHYR EQMRVAAAAF  300
EAAVGVGAAE IYTALASRAM SRHFRCLKDG LVGQIQATSQ ALGEREEDNR AVSIAARGET  360
PRLRLLDQAL RQQKSYRQMT LVDAHPWRPQ RGLPERAVTT LRAWLFEHFL HPYPSDVDKH  420
ILARQTGLSR SQVSNWFINA RVRLWKPMIE EMYCEETRGE QMEITNPMMI DTKPDPNQLI  480
RVEPESLSSI VTNPTSKTGH NSNHGTTSLG STFDFSLYGN QAVTYAGEGG PRGDVSLTLG  540
LQRNDGNGGV SLALSPVTAQ GGQLFYGRDH IEEGPVQYSA SMLDDDQVQN LPYRNLMGAQ  600
LLHDIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15393451563Homeobox protein Meis2
3k2a_B3e-15393451563Homeobox protein Meis2
4xrm_A4e-15393451563Homeobox protein Meis2
4xrm_B4e-15393451563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap493837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU399440.0U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds.
GenBankAY0492370.0AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874297.10.0homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLD7MIV50.0D7MIV5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__3270__AT5G41410.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]