PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493792
Common NameARALYDRAFT_493792
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 411aa    MW: 45507.7 Da    PI: 5.8651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493792genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.54.9e-117464052374
    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
              +lLl+cAe v++++l++a++lL+++se++sp g++ +R++ayf++AL++r+ +   s+ +  l+ ++ +  +s++ ++al++f+ vsP++kfsh+taNqaI 
  493792  46 LSLLLQCAEYVATNHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISsYLSGACTPLSEKPLTVVQSQRLFSALQTFNSVSPLIKFSHFTANQAIF 148
             689************************************************9997789999999999999999****************************** PP

    GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
             +a++ge+ vHiiD+d++qGlQWpaL++ LasRp++  s+RiTg+gs    s++ l +tg+rLa+fA++l++pfef+++  k  + +++++L +++gEa++V++
  493792 149 QALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFASSLNLPFEFHPIEGKIGNLIDPSQLGTRQGEAVVVHW 247
             **********************************************....9**************************988888899***************** PP

    GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
             +   hrl+d +++  +    +L+++++l+P++++vveqe+++ +++sFl +f+eal+yysalfd+l  +l++es er +vE+ +l+ ei+n+va+ g++    
  493792 248 MQ--HRLYDVTGNDLE----TLEILRRLKPNLITVVEQELSYdDGGSFLGGFVEALHYYSALFDALGDGLGEESGERFTVEQIVLATEIRNIVAHGGRR---- 340
             *9..****88888777....**********************8999***************************************************97.... PP

    GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
              ++ +kW+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+
  493792 341 -RRRMKWKEELNRVGFRPVSLRGNPAMQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWK 405
             .34467***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.28119385IPR005202Transcription factor GRAS
PfamPF035141.7E-11446405IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTTKRIDRDF PSSDDPSAAA KRRVNDIEFP EETLENDGAA AAIKLLSLLL QCAEYVATNH  60
LREASTLLSE ISEICSPFGS SPERVVAYFA QALQTRVISS YLSGACTPLS EKPLTVVQSQ  120
RLFSALQTFN SVSPLIKFSH FTANQAIFQA LDGEDSVHII DLDVMQGLQW PALFHILASR  180
PRKLRSIRIT GFGSSSDLLA STGRRLADFA SSLNLPFEFH PIEGKIGNLI DPSQLGTRQG  240
EAVVVHWMQH RLYDVTGNDL ETLEILRRLK PNLITVVEQE LSYDDGGSFL GGFVEALHYY  300
SALFDALGDG LGEESGERFT VEQIVLATEI RNIVAHGGRR RRRMKWKEEL NRVGFRPVSL  360
RGNPAMQAGL LLGMLPWNGY TLVEENGTLR LGWKDLSLLT ASAWKSQPFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1425140425378Protein SCARECROW
5b3h_A1e-1425140424377Protein SCARECROW
5b3h_D1e-1425140424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap493792
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170670.0AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBankBT0297600.0BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875190.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLD7MIP90.0D7MIP9_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh2_kg.7__3225__AT5G41920.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]