PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 493513 | ||||||||
Common Name | ARALYDRAFT_493513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 467aa MW: 52375.2 Da PI: 7.0171 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 24 | 114 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+++++++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF ++ F k++k+ll++i+ 493513 24 FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFLNDDFIKDQKHLLKNIH 111 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k 493513 112 RRK 114 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-36 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-61 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.49E-35 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.4E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-29 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR 60 LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI KDQKHLLKNI HRRKPIHSHS 120 HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKA VAKHQFEEMT EHVDDMEKRQ 180 KKLLNFLETA IRNPTFVKNF GRKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS 240 RRESGNIFHQ NFSNKLRLEL SPAVSDMNMV SHSIQSSNEE GGSPKGILSG GDPKTTLTRR 300 EGLPFAPEAL ELADTGTCPR RLLLNDITRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL 360 PEKTASQLAK TTLKSQELKF NSIETSASEK NRGRQEVAVG GSQANAAPPA RVNDVFWEQF 420 LTERPGSSDN EEASSTYRGN PDEEQEERRN GNMMSRNTKN IEQLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-24 | 3 | 113 | 1 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-24 | 3 | 113 | 1 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-24 | 3 | 113 | 1 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 493513 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY039528 | 0.0 | AY039528.1 Arabidopsis thaliana AT4g13980/dl3030c mRNA, complete cds. | |||
GenBank | BT001056 | 0.0 | BT001056.1 Arabidopsis thaliana At4g13980/dl3030c mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874977.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 0.0 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | D7MH90 | 0.0 | D7MH90_ARALL; AT-HSFA5 | ||||
STRING | fgenesh2_kg.7__2946__AT4G13980.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10134 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 0.0 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | 493513 |
Entrez Gene | 9306416 |
Publications ? help Back to Top | |||
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