PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

493215

Common Name

ARALYDRAFT_493215

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 202aa MW: 22285.3 Da PI: 9.9176

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
493215	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+++H 493215 5 HKCKLCSKSFCNGRALGGHMKSH 27 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.7E-5	3	28	No hit	No description
Pfam	PF13912	6.2E-6	5	27	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.598	5	27	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSTRKKLG DSVYSSSSSS SDGKALVYGL 60 RENPRKSFRV FNPDPESSTV YNSETETEPE SGDPVKKRVT ANVSKKKKKA KSKSKKQKTS 120 HESPEPASSV SDGSPEQDLA MCLMMLSRDS RELEIKLKKP VSEEEETKPE KRHFPELRRC 180 MIDLNLPPPQ DAEAVTVVSA I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	115	KKKKKAKSKSKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	493215

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161544	0.0	AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBank	BT004186	0.0	BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds.
GenBank	BT005392	0.0	BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97341	0.0	Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002868113.1	1e-145	zinc finger protein ZAT9
TrEMBL	D7MCD9	1e-143	D7MCD9_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__2648__AT4G16610.1	1e-144	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9510	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16610.1	1e-110	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	493215
Entrez Gene	9304185