PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 493120 | ||||||||
Common Name | ARALYDRAFT_493120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 511aa MW: 56995 Da PI: 7.438 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ 493120 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.38E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 7.49E-17 | 6 | 66 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.9E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.095 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 3.5E-10 | 270 | 366 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDQ 60 HRFQRMKSIS VSYKNKETKM LKRKAIQENI IMKRPVLEFN YGLKKAVIEE DASNRSSSGS 120 AVSNSESCAQ FSSADGSPSQ SNAWDTTVPC KRRTCVGRPK SSSVEKLTKD LYNILQEQQS 180 SCLSVSSEED LLFENEMTMV SVEIGHGSVL MKNPHSFSRE EESEASSLSS IENKSSISEA 240 YSHSVKRVEI GAERGSYYGG QTIKQEQFNR NKSQTERVHV LGSHGSPLCS IDLKDVFNFN 300 EFIEQFTEEE QKKLMKLLPQ IDSDDLPDSL RIMFESAQFK DNFSLFQQLI ADGVFDVSSS 360 SGAKLEDIRT FKKLALADFN KSRLVESYNL LKEREKGTGD SVTTTSKSSI PNVPKNIVTI 420 KRRCEDQTQL KSESRGLMRS PKRVMKMKAS HETENNVSCF RPRSLASVFA QEGGSAVFGY 480 EGNCSSDQDL LLLDLPSNGS FPQAELLHQL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 493120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062562 | 0.0 | AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874908.1 | 0.0 | GATA transcription factor 26 | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | D7M9I0 | 0.0 | D7M9I0_ARALL; Zinc finger family protein | ||||
STRING | fgenesh2_kg.7__2553__AT4G17570.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 0.0 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | 493120 |
Entrez Gene | 9304123 |