PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 493087 | ||||||||
Common Name | ARALYDRAFT_493087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 599aa MW: 65455.5 Da PI: 4.667 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 425 | 470 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L 493087 425 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 470 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.6E-54 | 62 | 254 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 421 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-18 | 424 | 490 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.07E-15 | 424 | 475 | No hit | No description |
Pfam | PF00010 | 3.9E-10 | 425 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-19 | 425 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-17 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MSPTNVQLTD YHLNQSTNGT TNLWSTDDDA SVMEAFIGGS DHSSLFPPLP PPPPPPVNED 60 NLQQRLQALI EGANESWTYA VFWQSSHDFA GEDDGVRTNN NNTTLLGWGD GYYKGEEEKS 120 RKKKSNPASA AEQEHRKRVI RELNSLISGG GGGGGDEAGD EEVTDTEWFF LVSMTQSFVN 180 GIGLPGQAFS NSNTIWLSGS NALAGSSCER ARQGQIYGLQ TMVCVATGNG VVELGSSEII 240 HQSSDLVDKV DTFFNGGGES GSWAFNLNPD QGENDPGLWI SEPNNNGDES GLVAAPVMMN 300 NGGNDSTSNS DSQPISKLCN GSSVENQVLK SGEMVRVKNG MENGFSGQSR FMEEDKRSPV 360 SNNEEGMLSF TSVLPRPAKS GDSNHSDLEA SVAKEAESNR FVVEPEKKPR KRGRKPANGR 420 EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQKAESD 480 KEELQKQFDG MIKEAGNSKS SVKDRRCLNQ ESSVLIEMEV DVKIIGWDAM IRIQCSKRNH 540 PGAKFMEALK ELDLEVNHAS LSVVNDLMIQ QATVKMGNQF FTQDQLKVAL MEKVGECP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 6e-93 | 20 | 250 | 3 | 227 | Transcription factor MYC3 |
4ywc_A | 6e-93 | 20 | 250 | 3 | 227 | Transcription factor MYC3 |
4ywc_B | 6e-93 | 20 | 250 | 3 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 406 | 414 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00086 | PBM | Transfer from AT4G17880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 493087 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221507 | 0.0 | AK221507.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH4, complete cds, clone: RAFL07-57-K04. | |||
GenBank | AL021889 | 0.0 | AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project). | |||
GenBank | AL161547 | 0.0 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874649.1 | 0.0 | transcription factor MYC4 | ||||
Swissprot | O49687 | 0.0 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | D7MDD6 | 0.0 | D7MDD6_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.7__2520__AT4G17880.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 493087 |
Entrez Gene | 9306151 |