PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 492491
Common NameARALYDRAFT_492491
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 341aa    MW: 37449 Da    PI: 5.5132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
492491genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19120170155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             ++++GVr+++ +g+W+AeIrdp +   r r +lg++ taeeAa  +++a+ +l+g
  492491 120 KKFRGVRQRP-WGKWAAEIRDPLK---RVRLWLGTYNTAEEAAMVYDNAAIQLRG 170
             59********.**********754...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-32120180No hitNo description
Gene3DG3DSA:3.30.730.106.9E-30121178IPR001471AP2/ERF domain
PROSITE profilePS5103223.406121178IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22121180IPR016177DNA-binding domain
SMARTSM003802.1E-37121184IPR001471AP2/ERF domain
PfamPF008476.7E-12121170IPR001471AP2/ERF domain
PRINTSPR003677.6E-10122133IPR001471AP2/ERF domain
PRINTSPR003677.6E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEAEKKMVLP RIKFTEHKTN TTTIVPDLTN NHQTRVLRIS VTDPDATDSS SDDEEEEHQR  60
FVSKRRRIKK FVNEVALDAG GVTGSCSQME SEKRQKRAVK SETAVSPVVS ATTTTTTTEK  120
KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVS  180
PTTTEKKPPP PSPVKKKKTS KVKKSVTASS SISRSSSNDC LCSPVSVLRS PFAVDEFSGI  240
SSPPPAAVVV KEEPSMTTVS ETFSDFSAPL FSDDDVFDFR SSVVPDYLGG DLFGEDLFTA  300
DICTDMNFGF DFGSGLSSWH LEDHFQDIGD LFGSDPLLAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20120177159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20120185470ATERF1
3gcc_A1e-20120185470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KRRRI
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap492491
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1978460.0EF197846.1 Arabidopsis halleri miR319a microRNA locus, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873605.10.0ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ20.0CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLD7M9160.0D7M916_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__1924__AT4G23750.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-169cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]