PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 492399
Common NameARALYDRAFT_492399, ZIM
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 312aa    MW: 33566.3 Da    PI: 6.2812
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
492399genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.8e-15216252135
    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  492399 216 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 252
             ******999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.62480115IPR010399Tify domain
SMARTSM009792.8E-1480115IPR010399Tify domain
PfamPF062002.0E-1282114IPR010399Tify domain
PfamPF062031.7E-14148190IPR010402CCT domain
PROSITE profilePS5101712.034148190IPR010402CCT domain
SuperFamilySSF577164.7E-13209268No hitNo description
PROSITE profilePS5011410.791210271IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-17210263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-15214257IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.51E-16215261No hitNo description
PROSITE patternPS003440216243IPR000679Zinc finger, GATA-type
PfamPF003205.3E-13216252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MFGRHSQSVI IPNNQIGTAS ASAGEDHVSA SATSGHIPYD DMDEIPHPDS IYGTASDLIP  60
DGSQLVAHRS DGSELLVSRP PEGANQLTIS FRGQVYVFDA VGPDKVDAVL SLLGGSTELA  120
AGPQVMELAQ QNHMPVVEYQ NRCNLPQRAQ SLDRFRKKRN SRCFEKKVRY GVRQEVALRM  180
ARNKGQFTSS KMTDGAYNSG TDQDSVQDDG HPEISCTHCG ISSKCTPMMR RGPSGPRTLC  240
NACGLFWANR GTLRDLSKKT EENQLALIKP SDGVSVADAA NNLNSEAATV EEHTSMVSLA  300
NGDNSHLLGD H*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap492399
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873632.10.0GATA transcription factor 25
RefseqXP_020873633.10.0GATA transcription factor 25
SwissprotQ9LRH60.0GAT25_ARATH; GATA transcription factor 25
TrEMBLD7M8T90.0D7M8T9_ARALL; Zinc-finger protein expressed in inflorescence meristem
STRINGfgenesh2_kg.7__1832__AT4G24470.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.20.0GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]