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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
492266 |
Common Name | ARALYDRAFT_492266 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
C2H2 |
Protein Properties |
Length: 589aa MW: 66347.8 Da PI: 9.3847 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
492266 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
kC++C++ F ++ n++rH r+H
492266 62 KCEKCSREFCSPVNFRRHNRMH 83
7*******************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 589 aa
Download sequence Send
to blast |
MELVKQDGND SVDMLIRRAV GKDPFLSFHR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM 60 QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDSGKERDAL GAFWNKLSAT DAKEILSLKS 120 MMLEDVPGAS VESGLMSLIE KPGYTALPQY YLRAGSGLLD ILQARPPRFP ISSQELFSIL 180 DDASEKTFLS SEAAPMQKYI FDGEIGKTVL EAKNVVACVS FLLEQPLIKA WLADKDVEAL 240 RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQREKDQK KDDKEEESTT SEEQQYPAES 300 SSPLSVASDA EAQRPDSIPI DDSSSLEDPQ VLETNNGRNV ETQAPMVDDN GLGHGQNMER 360 RSGRRQMQRS QQGMLNGFHV NHAPKLGGMR KNGTNRDARV NTTKVWSRKS DNPKLISQHA 420 AVTQQDQTEI SEFRIGSVSV TIRNSGEHNQ TKCSEGEGRT KTVEAKPTSE QSTVKIWRPV 480 SSQGRKISTV DENTDKEDKK SNSTLPKAKT AHHISLQFNN HEAKAFLAKR WKEATTAEHV 540 TLVLSQETNI SGNNTHESSN GVITARPELR TKPEKGTKVK YVPKQRIP*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 261 | 268 | ERKKRKKL |
2 | 263 | 267 | KKRKK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY081294 | 0.0 | AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds. |
GenBank | BT000386 | 0.0 | BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds. |