PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 491763 | ||||||||
Common Name | ARALYDRAFT_491763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29477.2 Da PI: 4.5779 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 1e-10 | 57 | 99 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N+ ++ Lr+++P+ + Kl+Ka++ + ++Y+++L 491763 57 VSERNRRQKLNQTLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99 57*********************66......***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.478 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.53E-9 | 53 | 99 | No hit | No description |
SuperFamily | SSF47459 | 9.55E-16 | 54 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 56 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-11 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-8 | 57 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGDS SSPDGAATSP ASSKNVVSER 60 NRRQKLNQTL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESRSLLL 120 ENPIRDYDCA NNFAENQLQD FSDNNGLRSK KFKHMGYDTR VQHYPIEVLE MKVTWMGEKT 180 VVVCITCSKK RETMLQLCKV LESLNLNILT TNFSSFTSRL STTLFLQADE EERSAVEAKI 240 QMAIAAYNDP NCLINF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 491763 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117730 | 0.0 | AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21. | |||
GenBank | AK176201 | 0.0 | AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06. | |||
GenBank | AK176276 | 0.0 | AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11. | |||
GenBank | AK228201 | 0.0 | AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05. | |||
GenBank | BT005869 | 0.0 | BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874507.1 | 0.0 | transcription factor bHLH27 isoform X2 | ||||
Swissprot | Q700E3 | 1e-155 | BH027_ARATH; Transcription factor bHLH27 | ||||
TrEMBL | D7MCG2 | 0.0 | D7MCG2_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.7__1196__AT4G29930.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12841 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29930.1 | 1e-134 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 491763 |
Entrez Gene | 9303452 |
Publications ? help Back to Top | |||
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