PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491651
Common NameARALYDRAFT_491651
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 309aa    MW: 32746.5 Da    PI: 6.8451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491651genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11139184555
             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  491651 139 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 184
             99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-13132188No hitNo description
PROSITE profilePS5088817.301134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9139184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNSSSLLTPS SSSSPHLQSP ATFDHDDFLH QIFSSTPWPS SVLDDAPPPT SDCAAVTGFH  60
HHDADSRNQI TMIPLSHNHH NDALFNGFST GSLPFHLPQG SGGQTQSQAT ASTTTGGTTV  120
QPQTKPKVRA RRGQATDPHS IAERLRRERI AERMKSLQEL VPNGNKTDKA SMLDEIIDYV  180
KFLQLQVKVL SMSRLGGAAS VSSQISEDAG GSHENTSSSG EAKMTEHQVA KLMEEDMGSA  240
MQYLQGKGLC LMPISLATTI STATCPSRNP FVKDTGVPLS PNLSTTTVAN GNGSSLVTVK  300
DAPSVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap491651
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886010.0AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875086.10.0transcription factor bHLH69
SwissprotQ8S3D50.0BH069_ARATH; Transcription factor bHLH69
TrEMBLD7MBK20.0D7MBK2_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.7__1084__AT4G30980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-174LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]