PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491574
Common NameARALYDRAFT_491574
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 322aa    MW: 36467.9 Da    PI: 9.022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491574genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.77.9e-2253144598
             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
              +++++l++++++l  kfa+++g++ +e  ++ l de+ +sW++ l+++kk g+ ++++GW++F++ ng+k+g f+ Fkl++ s+ ++v++++ 
  491574  53 HVTPSSLRRDIMCLLSKFARSNGLDRRE-CEIDLIDEHEKSWTLLLRHNKKTGQAFMRGGWRSFCRNNGIKAGSFCRFKLVQ-SGIKPVLQLCP 144
             578999****************999655.6**************************************************98.89999999986 PP
2B3352.6e-11192258675
             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
             ++++v++s++++lp +fa+e+g+++++  ++t+ +++g +W+  l   k++++++++   ++F  ang+k
  491574 192 LKPYVFRSCQFRLPASFARENGIVEAG--EVTVLNKDGVEWKSHLVNVKGRDQFYIR-SCQDFFVANGIK 258
             579*********************877..7***************889999999999.778888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2142145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-2045149IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.73149145IPR003340B3 DNA binding domain
SMARTSM010194.4E-2749146IPR003340B3 DNA binding domain
PfamPF023621.5E-1953144IPR003340B3 DNA binding domain
CDDcd100178.62E-2054144No hitNo description
Gene3DG3DSA:2.40.330.102.8E-6184259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-7185258IPR015300DNA-binding pseudobarrel domain
CDDcd100177.46E-8186258No hitNo description
SMARTSM010192.5E-8187279IPR003340B3 DNA binding domain
PfamPF023626.9E-10192258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
LMTINQCLMT MNNGVRIINL TITPSKKSIR ISSKKRARTE TESSSDRSYL LAHVTPSSLR  60
RDIMCLLSKF ARSNGLDRRE CEIDLIDEHE KSWTLLLRHN KKTGQAFMRG GWRSFCRNNG  120
IKAGSFCRFK LVQSGIKPVL QLCPNASSIP EGNSSKASKK RNVSESEGDE IESEDCSETV  180
AMNQNKIMTF DLKPYVFRSC QFRLPASFAR ENGIVEAGEV TVLNKDGVEW KSHLVNVKGR  240
DQFYIRSCQD FFVANGIKYV VTVLVLGFCY CEIVVLKRIV SSIVDTLTDV RRFQRELEVK  300
EHNLEASLQE IDALGMNLNY Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMap491574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0310040.0AL031004.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project).
GenBankAL1615790.0AL161579.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872458.11e-171LOW QUALITY PROTEIN: putative B3 domain-containing protein REM4
SwissprotQ9SB791e-153REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLD7MB440.0D7MB44_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.7__1007__AT4G31630.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-138B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]