PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491187
Common NameARALYDRAFT_491187
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 269aa    MW: 30294.8 Da    PI: 6.7059
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491187genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.2e-18181214134
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
             Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  491187 181 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 214
             *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-856268IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15175225IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-14178237No hitNo description
Gene3DG3DSA:3.30.50.106.4E-14179212IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.952179211IPR000679Zinc finger, GATA-type
CDDcd002024.52E-15180237No hitNo description
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
PfamPF003205.0E-16181215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MELWTEARAL KASLRGESTT SLKHHQLIVS EDLSRTSSLS EDFSVECFLD FSEGQKEEEE  60
LVSVSSSQEE QEQEQDCIFS SQPCIFDQLP SLPDEDVEEL EWVSRVVDDC SSPEVSLLLT  120
QTHKTKPSFS RIPVKPRTKR SRNSLTGGRV WPLVSTNHQH AATEQLRKKK QETAVVFQRR  180
CSHCGTNNTP QWRTGPVGPK TLCNACGVRF KSGRLCPEYR PADSPTFSTE IHSNLHRKVL  240
ELRKSKELGE ETGEASTKSN QVKFGSKW*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap491187
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171630.0AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07.
GenBankY136500.0Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875245.10.0GATA transcription factor 3
SwissprotQ8L4M61e-174GATA3_ARATH; GATA transcription factor 3
TrEMBLD7MDJ60.0D7MDJ6_ARALL; GATA transcription factor
STRINGfgenesh2_kg.7__620__AT4G34680.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-175GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]