PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491122
Common NameARALYDRAFT_491122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Nin-like
Protein Properties Length: 976aa    MW: 108410 Da    PI: 6.3726
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491122genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.68.9e-27658708252
  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
             ek+i le+l++yF++++kdAAk++g c+T+LKriCRq+GI RWP+Rkik++
  491122 658 EKTIGLEVLRQYFAGSLKDAAKSIGGCPTTLKRICRQHGITRWPSRKIKKV 708
             799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.37647728IPR003035RWP-RK domain
PfamPF020424.6E-23661708IPR003035RWP-RK domain
SuperFamilySSF542775.33E-24864960No hitNo description
Gene3DG3DSA:3.10.20.2406.4E-25872956No hitNo description
PROSITE profilePS5174529.794874957IPR000270PB1 domain
SMARTSM006661.8E-28874957IPR000270PB1 domain
CDDcd064079.10E-42876956No hitNo description
PfamPF005643.3E-18876956IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MEGGRGGGDG NFLPNSNFGA FSESAMDMDF MDELFFDGCW LETTDGKSFK QTMGQPVSDS  60
TIMNDNNNNS YLYGYQYTEN LSQDHISNEE TGRKFPPITP SFLKIEDLSN QLPFDEAAVM  120
SSAQAEKLLL EESEGGRRYW IAPRTSQGPS SSVKDRLVQA IKGLNEAVQD KDFLIQIWVP  180
IQQEGKNFLT TLEQPHFFNP KYSSLKRYRD VSVAYNFLAD EDSKESVGLP GRVFLGKLPE  240
WTPDVRFFRS EEYPRIKEAE KCDVRGSLAL PVFERGSGIC LGVVEIVTTT QKMNYRPELD  300
NICKALESVN LRSSRSLNPP SREVCQNGLI NQTLTSSIHR NNDIVFLNVI IPFCFSFCRL  360
YDLPLALTWA PCARQGKVGS RHSDENFSEC VSTVDDACIV PDHQSRHFLE ACSEHHLLQG  420
EGIVGKAFKA TKLFFVPEVT TFSKTNYPLA HHAKISGLHA ALAVPLKNKF NSSVEFVLEF  480
FFPKACLDTE AQQEMLKSLS ATLQQDFRSL NLFIDKELEL EVVFPVREEV VFAENPLLNA  540
GTGENMKPLP LEDMSQEDSS WISHMIKANE KGKGVSLSWE YQKEEPKEEF MLTSGWDNNQ  600
IGSGHNNFLS EAEQFQKVSN SGLRIDMDPS FESASFGVVG QTLLGSRRPG EKRRTKTEKT  660
IGLEVLRQYF AGSLKDAAKS IGGCPTTLKR ICRQHGITRW PSRKIKKVGH SLKKLQLVID  720
SVQGVQGSIQ LDSFYTSFPE LSSPHMSGTG TSFKNLNAQT ENGGSAQGTA AAPKSPPSSS  780
CSHSSGSSTC CSTGANQSTN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQDETKSL  840
SRTLSHKTFS EHPLFENPPR LPENSSRKLK AGGASKVKAT FGEAKVRFTL LPTWGFRELQ  900
HEIARRFNID NIAPFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQV  960
KLGGSFGSIG LGPSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap491122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5799120.0AJ579912.1 Arabidopsis thaliana partial mRNA for NIN-like protein 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874363.10.0protein NLP2
RefseqXP_020874364.10.0protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLD7MD230.0D7MD23_ARALL; RWP-RK domain-containing protein
STRINGfgenesh2_kg.7__555__AT4G35270.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein