PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490909
Common NameARALYDRAFT_490909
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 283aa    MW: 31121.6 Da    PI: 6.2682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490909genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.8e-36151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+RQLn+YgF+k+  ++         weF++++F++g ++ll++i+
        490909  15 FLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDYFRRGGEDLLSEIR 102
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
        490909 103 RRKS 106
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-37698IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.9E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTAVTAAQRS VPAPFLSKTY QLVDDHSTDD VVSWNEEGTA FVVWKTAEFA KDLLPQYFKH  60
NNFSSFIRQL NTYGFRKTVP DKWEFANDYF RRGGEDLLSE IRRRKSVIAS TAGKCVVVGS  120
PSESNSGGDD HGSSSTSSPG SSKNPGSVEN MVADLSGENE KLKRENNNLS SELAAAKKQR  180
DELVTFLTDH LKVRPEQIDQ MIKGGKFKPV ESDEESECEG CGGGGAEEGV GEGLKLFGVW  240
LKGERKKRDR DEKHYLVGGS GMTELKNVDF HAPLWKSSKV CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24510420129Heat shock factor protein 1
5d5v_B3e-24510420129Heat shock factor protein 1
5d5v_D3e-24510420129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap490909
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207600.0AY120760.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds.
GenBankBT0033690.0BT003369.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds.
GenBankY140690.0Y14069.1 Arabidopsis thaliana mRNA for heat shock factor 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874746.10.0heat stress transcription factor B-1
SwissprotQ963201e-177HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLD7MB010.0D7MB01_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__342__AT4G36988.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-138heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]