PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490675
Common NameARALYDRAFT_490675
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family DBB
Protein Properties Length: 239aa    MW: 26372.3 Da    PI: 6.0241
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490675genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06533634
  zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
              C+ ++++e++ fC  ++  lC+ C  + H
    490675  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
              *************************9988 PP
2zf-B_box29.12e-095592338
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
              ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
    490675 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
              789*****************************767876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000217.02E-6533No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006437.2E-85593IPR000315B-box-type zinc finger
CDDcd000216.40E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGVKISASPS AYPRASNSNS  120
AAALGRAKTR PKSVSSEVPS SASNEVFTSS PSTTTSNCYY GIEENYHQVS DSGSGSGCTG  180
SISEYLMETL PGWRVEDLLE HPSCVSYEDN IITNNNNSES YRVYDGYHQG FWEQKPFS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap490675
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303790.0AK230379.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-29-C17.
GenBankBT0288930.0BT028893.1 Arabidopsis thaliana unknown protein (At4g39070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872126.11e-179B-box zinc finger protein 20
SwissprotQ0IGM71e-154BBX20_ARATH; B-box zinc finger protein 20
TrEMBLD7MGB01e-178D7MGB0_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.7__108__AT4G39070.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-144DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]