PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490409
Common NameARALYDRAFT_490409
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 338aa    MW: 38057.4 Da    PI: 7.5851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490409genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g + R++k+c++rw +yl
           490409 14 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGmLQRCGKSCRLRWINYL 62
                     678********************************************97 PP
2Myb_DNA-binding45.71.6e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
           490409  68 RGAFSQDEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 111
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-28665IPR009057Homeodomain-like
PROSITE profilePS5129425.693966IPR017930Myb domain
SuperFamilySSF466892.92E-2912109IPR009057Homeodomain-like
SMARTSM007172.5E-131364IPR001005SANT/Myb domain
PfamPF002495.7E-161462IPR001005SANT/Myb domain
CDDcd001671.04E-111762No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2566117IPR009057Homeodomain-like
SMARTSM007179.1E-1367115IPR001005SANT/Myb domain
PROSITE profilePS5129420.79967117IPR017930Myb domain
PfamPF002491.9E-1368112IPR001005SANT/Myb domain
CDDcd001674.07E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGMLQRC GKSCRLRWIN  60
YLRPDLKRGA FSQDEENLII ELHAVLGNRW SQIAAQLPGR TDNEIKNLWN SCLKKKLRLR  120
GIDPVTHKLL TEIETGTDDK PKPVEKSQQT YLVETDGSSS TTTCSTNQNN NTDHLYTGNF  180
GFQRLSLENG SRIATGSDLG IWIPQTGRNH HHHVDETIPS AVVLPGSMFS SSLTGYRSSN  240
LGLIELENSF STGPMMTEHQ QLQESNYNNS TFFGNGNPNW GITMEENQNP FTISNHSNSS  300
LYSDIKSETN FFGTEATNVG MWPCNQLQPQ QHAYGHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00427DAPTransfer from AT4G01680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap490409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760000.0AF176000.2 Arabidopsis thaliana putative transcription factor (MYB55) mRNA, complete cds.
GenBankAY0545750.0AY054575.1 Arabidopsis thaliana Unknown protein (At4g01680; T15B16.4) mRNA, complete cds.
GenBankBT0003520.0BT000352.1 Arabidopsis thaliana Unknown protein (At4g01680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879491.10.0transcription repressor MYB6 isoform X1
RefseqXP_020879492.10.0transcription repressor MYB6 isoform X1
SwissprotQ8VZQ21e-83MYB61_ARATH; Transcription factor MYB61
TrEMBLD7M4A00.0D7M4A0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__3543__AT4G01680.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.10.0myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]