PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489946
Common NameARALYDRAFT_489946, WRKY41
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 314aa    MW: 34828.1 Da    PI: 7.002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489946genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.7e-27141199459
             SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   4 gynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
              ++WrKYGqK++ g+++prsYYrCt++    C+++k+v+rs+ dp+++e+tY+g+H+++
  489946 141 VFSWRKYGQKDILGAKYPRSYYRCTFRntqYCWATKQVQRSDGDPTIFEVTYRGTHTCS 199
             69***********************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.071133196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-25135199IPR003657WRKY domain
SuperFamilySSF1182904.05E-23137199IPR003657WRKY domain
SMARTSM007744.4E-35137200IPR003657WRKY domain
PfamPF031062.2E-24142198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEMMNWEQRN LLNELIHGLK AAKQLQASPS PSPSTSSLTM EMKETLLHNI VSSLEKAILM  60
LNGSTTQHIP TTELALDLLA NPGKVPESPA SITESLRSEE LFDVGSKDCN LSSKKRKMLP  120
KWTEQVRISP ERGLEGPHDG VFSWRKYGQK DILGAKYPRS YYRCTFRNTQ YCWATKQVQR  180
SDGDPTIFEV TYRGTHTCSQ GIPPPKIQET KPNHTVAVNY QNNVDNLRTN LTVRTNGLEA  240
STFSFPVTSP FYTYESINGG TLCHVGSSAP SDFTGLISTN TSTGSSPIFD VDFHFDPTAE  300
INTGFPTFLH NSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-181431981368OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap489946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423960.0AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336860.0AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872545.10.0probable WRKY transcription factor 41
SwissprotQ8H0Y80.0WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLD7LYW10.0D7LYW1_ARALL; WRKY DNA-binding protein 41
STRINGfgenesh2_kg.6__3080__AT4G11070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.10.0WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]