PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489663
Common NameARALYDRAFT_489663
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 311aa    MW: 33853.9 Da    PI: 9.2967
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489663genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.2e-15148202458
             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
             +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k l   +++  +
  489663 148 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNE 202
             79*****************************************998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-17145209IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.99147210IPR004827Basic-leucine zipper domain
PfamPF001703.1E-13148197IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.64E-12148199No hitNo description
Gene3DG3DSA:1.20.5.1708.7E-13149198No hitNo description
PROSITE patternPS000360152167IPR004827Basic-leucine zipper domain
PfamPF124982.9E-12216258IPR020983Basic leucine-zipper, C-terminal
PfamPF124981.7E-5277305IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEKVFSDEEI SGNHHWSVNG TTAMNRSASE WAFHRFIQES SAGESTTACG VSVSSPPNVP  60
VDSDEYRAFL KSKLNLACAA VAMKRGCFIK PQDTSGRSDN GGASASEQGS LASSKATPMM  120
SSAITSGSEL SGDEEEADGE TNMNPTNVKR VKRMLSNRES ARRSRRRKQA HLSELETQVS  180
QLRVENSKLM KGLTDVTQTF NEASVENRVL KANIETLRAK VKMAEETVKR LTGFNPMFHT  240
MPQIVSTVSL PSETSNSLET TSSQVTAPEI ISSGNKSKAL IGCKMNRTAS MRRVESLEHL  300
QKRIRSVGDQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168RRSRRRKQ
2163168SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap489663
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171690.0AK317169.1 Arabidopsis thaliana AT5G28770 mRNA, complete cds, clone: RAFL21-54-H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874448.10.0basic leucine zipper 63 isoform X1
SwissprotB9DGI80.0BZP63_ARATH; Basic leucine zipper 63
TrEMBLD7M6Y60.0D7M6Y6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2797__AT5G28770.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.20.0bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]