PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

489543

Common Name

ARALYDRAFT_489543

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 286aa MW: 31506.4 Da PI: 9.82

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
489543	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H++ H 489543 78 YTCHFCKKGFSTSQALGGHQNAH 100 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.13E-7	75	105	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-5	76	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.822	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MSSSSSSTPT PKSKKLKGIV VAMEKSKEKA TRSTNLKLGS PQEVTSERRF ENSSFGSSAV 60 RRGREIMKFY PSKSNKIYTC HFCKKGFSTS QALGGHQNAH KQEREWDKKR KEMQADYPGL 120 AFFNPYLDKP HILLGGYSQD ALSNENHLGI TLDPFKRLIY PSFKSGVIGG IADMNVAVVP 180 RVTPTRFFTG NTSTNGSASR VPNPLPSYNN LYPLNSRNVL PFPPFQTTKL SSNLVSQGNG 240 LSEENFISKI GTKNNIVEID DDDDDDIQPE EEKTKSGGID LSLSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	489543

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007399	0.0	AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874341.1	0.0	zinc finger protein JAGGED
TrEMBL	D7M5G8	0.0	D7M5G8_ARALL; Zinc finger family protein
STRING	fgenesh2_kg.6__2677__AT5G27880.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	1e-156	C2H2 family protein

Link Out ? help Back to Top
Phytozome	489543
Entrez Gene	9308324