PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

489094

Common Name

ARALYDRAFT_489094

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 236aa MW: 26662 Da PI: 5.2192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
489094	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.6	7.6e-43	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 + GfrF Pt+eelv +yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+s++++ 489094 6 TIGFRFYPTEEELVAFYLRNQLEGRSdDSMHRVIPVLDVFEVEPSHLPNvagvRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSNDNRM 108 57*********************95555677***********556666666888*************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kkt+vfy+g+ap+g+kt+W m+ey++ 489094 109 IGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 *************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	47.035	5	162	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-47	5	162	IPR003441	NAC domain
Pfam	PF02365	5.9E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MADEVTIGFR FYPTEEELVA FYLRNQLEGR SDDSMHRVIP VLDVFEVEPS HLPNVAGVRC 60 RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSNDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAVDE TVNASTIPKL RHEFSLCRVY ITTGSSRAFD RRPVEVLQTE 180 RMLTSDVAVA ETSFRVESSS ETSISGGENI DLSMSTELVD GLTEPIWEWE QLSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-33	8	167	23	173	NAC domain-containing protein 19
3swm_B	3e-33	8	167	23	173	NAC domain-containing protein 19
3swm_C	3e-33	8	167	23	173	NAC domain-containing protein 19
3swm_D	3e-33	8	167	23	173	NAC domain-containing protein 19
3swp_A	3e-33	8	167	23	173	NAC domain-containing protein 19
3swp_B	3e-33	8	167	23	173	NAC domain-containing protein 19
3swp_C	3e-33	8	167	23	173	NAC domain-containing protein 19
3swp_D	3e-33	8	167	23	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	489094

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874067.1	1e-175	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-164	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	D7M0X0	1e-173	D7M0X0_ARALL; ANAC090
STRING	fgenesh2_kg.6__2228__AT5G22380.1	1e-174	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-141	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	489094
Entrez Gene	9308069

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]