PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 488432 | ||||||||
Common Name | ARALYDRAFT_488432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CO-like | ||||||||
Protein Properties | Length: 349aa MW: 38727 Da PI: 6.8197 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.7e-06 | 11 | 52 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++ + + +C+ ++ +lC +C + H H++v 488432 11 ACDTCRSAACTVYCRADSAYLCTSCDAQVHAAnrlasrHERV 52 6******99*********************556788888776 PP | |||||||
2 | zf-B_box | 37 | 7.2e-12 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC +C +e+H+ H++vp+ 488432 52 VRVCQSCERAPAAFFCKADAASLCTTCDSEIHSAnplarrHQRVPI 97 689*****************************66899999**9997 PP | |||||||
3 | CCT | 66.4 | 8.2e-23 | 279 | 323 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e 488432 279 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKRNE 323 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-8 | 7 | 54 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.722 | 12 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.62E-7 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 12.358 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-9 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.08E-8 | 53 | 97 | No hit | No description |
SMART | SM00336 | 7.1E-13 | 55 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.4E-17 | 279 | 321 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.559 | 279 | 321 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MMKVESNWGQ ACDTCRSAAC TVYCRADSAY LCTSCDAQVH AANRLASRHE RVRVCQSCER 60 APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI SENSYSSTAT NHSCETTVTD 120 PENRLVLGQG EEDEDEAEAA SWLLPNSGKN NGNNNGFSIG DEFLDLVDYS SSDKQFTDQS 180 NQYQLDCNVP QRSYEDGVVP LQVEVSKGHM NHEQQNFQLS ITCGSPRAHR SSNGSLSHMV 240 HVSSIDLGVV PESTNPRSPK AVTDQLPDPP AQMLSPRDRE ARVLRYREKK KMRKFEKTIR 300 YASRKAYAEK RPRIKGRFAK RNEVDAEANE AFSTIITFDT GYGIVPSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 292 | REKKKMR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 488432 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074369 | 0.0 | AY074369.1 Arabidopsis thaliana putative CONSTANS 1 protein (At5g15850) mRNA, complete cds. | |||
GenBank | BT002363 | 0.0 | BT002363.1 Arabidopsis thaliana clone U10630 putative CONSTANS 1 protein (At5g15850) mRNA, complete cds. | |||
GenBank | Y10555 | 0.0 | Y10555.1 A.thaliana mRNA for CONSTANS like 1 (COL1) protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873745.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 0.0 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | D7M7G9 | 0.0 | D7M7G9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__1566__AT5G15850.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 0.0 | CONSTANS-like 1 |
Link Out ? help Back to Top | |
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Phytozome | 488432 |
Entrez Gene | 9309813 |
Publications ? help Back to Top | |||
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