PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488363
Common NameARALYDRAFT_488363
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 269aa    MW: 28917.4 Da    PI: 8.7012
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488363genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3251107459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  ++YkeClkNhAa +Ggha+DGCgEfmps+  + +++++l+CaACgCHRnFHRre++ 
       488363  51 ATYKECLKNHAAGIGGHALDGCGEFMPSPLFNtNEPTSLTCAACGCHRNFHRREEDP 107
                  78**************************9999788******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2844104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-2752105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-3152104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.78653104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.37E-18163234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27166233IPR009057Homeodomain-like
TIGRFAMsTIGR015658.2E-24176232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MATTTTIVSD LDSRQPETEA PTRIQPAKPI SFSNGKRCHH HHLASEAVAV ATYKECLKNH  60
AAGIGGHALD GCGEFMPSPL FNTNEPTSLT CAACGCHRNF HRREEDPSSL SAVVPAIEFR  120
PHNRHQLPPP PPPHAVGIRS PDNDDSPSPP PISSSYMLLA LSGGGGGANT AVPMSRKRFR  180
TKFSQYQKEK MFEFSERVGW RMPKADDVDV KEFCREIGVD KSVFKVWMHN NKISGRGGAR  240
RANTGGVGGG GGDSRESVVP TNGSFSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-221752351676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap488363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankBT0121950.0BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876810.10.0zinc-finger homeodomain protein 8
SwissprotQ9LXG01e-169ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLD7M7A40.0D7M7A4_ARALL; ATHB30/ZFHD3
STRINGfgenesh2_kg.6__1497__AT5G15210.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-156homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]