PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488229
Common NameARALYDRAFT_488229
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 154aa    MW: 17242.1 Da    PI: 7.1929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488229genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-053860123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C++ F ++  L  H++ H
   488229 38 FPCQYCPRKFYTSQALGGHQNAH 60
             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-63465No hitNo description
PROSITE profilePS5015711.0533865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAEPPPSYHH FVSPAKPRSS SKRHSFSSSS HPTSHRLFPC QYCPRKFYTS QALGGHQNAH  60
KRERAAARRN LGVLANSPPI LDDNTFLRPY PCFYQNPFQG STSGSEPVQE QTTMMTMGGY  120
DPFNPFPYVY PFGLSGNNDG NGVMEEDEPL DLDL
Functional Description ? help Back to Top
Source Description
UniProtMay function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap488229
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052301e-176AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBankAB4937471e-176AB493747.1 Arabidopsis thaliana At5g14010 mRNA for hypothetical protein, partial cds, clone: RAAt5g14010.
GenBankAY6126081e-176AY612608.1 Arabidopsis thaliana KNUCKLES (KNU) mRNA, complete cds.
GenBankBT0247031e-176BT024703.1 Arabidopsis thaliana At5g14010 mRNA, complete cds.
GenBankCP0026881e-176CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877911.11e-112zinc finger protein KNUCKLES
SwissprotQ9FFX45e-84KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLD7M5Z11e-110D7M5Z1_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__1363__AT5G14010.11e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-78C2H2 family protein
Publications ? help Back to Top
  1. Sun B, et al.
    Timing mechanism dependent on cell division is invoked by Polycomb eviction in plant stem cells.
    Science, 2014. 343(6170): p. 1248559
    [PMID:24482483]
  2. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]