PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487938 | ||||||||
Common Name | ARALYDRAFT_487938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 392aa MW: 44126.8 Da PI: 6.1652 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.9e-08 | 330 | 363 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + 487938 330 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363 469*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.5e-10 | 284 | 305 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ 487938 284 ELKHELKQGYKEKIVDIREEIL 305 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-19 | 119 | 163 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.0E-17 | 122 | 162 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.3E-28 | 175 | 230 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.7E-20 | 180 | 229 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 284 | 304 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 284 | 305 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.9E-7 | 284 | 305 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 304 | 367 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-11 | 306 | 371 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 306 | 370 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.20E-11 | 307 | 368 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 311 | 368 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 324 | 363 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MAFHNNHFNH FTDQQQHQPS PPPPPSQQQQ QQHFHESAPP NWLLRSDNNF LNLHTAATSS 60 DSPSSAAANQ WLSRSSSFLQ RGGTANNNDE TSGDVIEDVA GGEESMIGEK KEAERWQNAR 120 HKAEILSHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQNVVAKYST LEAAQGLLAG 180 DDKELDHFMT HYVLLLCSFK EQLQQHVRVH AMEAVMACWE IEQSLQSFTG VSPGEGTGAT 240 MSEDEDEQVE SDAPLFDGSL DGLGFGPLVP TESERSLMER VRQELKHELK QGYKEKIVDI 300 REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ 360 RKRNWHSNPS SSTVSKNKRR SNAGENSGRE R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 307 | 371 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487938 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X92393 | 0.0 | X92393.1 A.thaliana mRNA for KNAT4 homeobox protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878249.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X1 | ||||
Swissprot | P48001 | 0.0 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | D7M3L6 | 0.0 | D7M3L6_ARALL; KNAT4 homeobox protein | ||||
STRING | fgenesh2_kg.6__1072__AT5G11060.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 0.0 | KNOTTED1-like homeobox gene 4 |
Link Out ? help Back to Top | |
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Phytozome | 487938 |
Entrez Gene | 9307522 |
Publications ? help Back to Top | |||
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