PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487838
Common NameARALYDRAFT_487838
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family EIL
Protein Properties Length: 466aa    MW: 53166.4 Da    PI: 5.1245
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487838genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3394.51.5e-120232921286
             XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdr 103
             ++lk+rmwkd++l+++lk++k+++   k++ ++ +   ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WWke+v+fd+
  487838  23 DDLKRRMWKDRNLMEKLKQQKRHS---KDV-VSFT--THRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWWKENVQFDQ 119
             79********************95...555.5554..4899************************************************************** PP

             XXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--H CS
    EIN3 104 ngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkk 203
             n+p ai++y   +a+ ++++  ++ ++++ss  h+l+elqDTtlgSLLsalmqhc+ppqrrfplekg++pPWWPtG+elwwge+g ++++g+ppy+kphdl+k
  487838 120 NAPDAITDYltlAAAAAAAELIDK-SSSSSSLLHMLQELQDTTLGSLLSALMQHCMPPQRRFPLEKGIAPPWWPTGTELWWGEQGSAHEHGAPPYRKPHDLRK 221
             *********986333333332233.3458999*********************************************************************** PP

             HHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    EIN3 204 awkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedveg 286
              wkvsvL+avikhmsp++ ++r+l+rqsk+lqdkm+ake++++++vlnqee+++            + +++++s++q++++ g
  487838 222 SWKVSVLAAVIKHMSPNLGRVRRLARQSKSLQDKMMAKETDTWSRVLNQEEALL------------NIKDLKISEDQDQESSG 292
             ***************************************************987............45555555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.9E-11723272No hitNo description
Gene3DG3DSA:1.10.3180.103.0E-67145276IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.57E-58151275IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVEVEELEPL SPIEDEEEEI SYDDLKRRMW KDRNLMEKLK QQKRHSKDVV SFTTHRAEAS  60
RRKKMARSQD SVLKYMMKIM EVCKAKGFVY GIVPEKGKPI TGSSDSLRRW WKENVQFDQN  120
APDAITDYLT LAAAAAAAEL IDKSSSSSSL LHMLQELQDT TLGSLLSALM QHCMPPQRRF  180
PLEKGIAPPW WPTGTELWWG EQGSAHEHGA PPYRKPHDLR KSWKVSVLAA VIKHMSPNLG  240
RVRRLARQSK SLQDKMMAKE TDTWSRVLNQ EEALLNIKDL KISEDQDQES SGSKRKGEFM  300
EPSKSVYTCQ NSSCPKSDVS FGFGDKNSRT GHEIQCLYGS TQEPSQSGEY TPSMLEMVPS  360
IVTSSTSDDD YYSVSSSAMD KRDGDDHSIN GNWMEYFWLE KMQQELHCSR TFEDDEGTGT  420
DMNQFTESDR SDNVNQKSDR SDNVNQSNFS VWDMGCEDKD IYMFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-571522744126Protein ETHYLENE INSENSITIVE 3
4zds_B3e-571522744126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap487838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3563320.0AL356332.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878013.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X2
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLD7M2T80.0D7M2T8_ARALL; Ethylene insensitive 3 family protein
STRINGfgenesh2_kg.6__972__AT5G10120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]