PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487754
Common NameARALYDRAFT_487754
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 998aa    MW: 112461 Da    PI: 6.4036
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487754genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11871.9e-58211382118
    CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
             l+e ++rwl++ ei++iL+n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e n++fqrrcyw+Le
  487754  21 LSEaQHRWLRPAEICEILQNYHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEGNENFQRRCYWMLE 123
             45559************************************************************************************************** PP

    CG-1 104 eelekivlvhylevk 118
             ++l +iv+vhylevk
  487754 124 QDLMHIVFVHYLEVK 138
             ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.64717143IPR005559CG-1 DNA-binding domain
SMARTSM010762.3E-8520138IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-5123137IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.23E-14402488IPR014756Immunoglobulin E-set
PfamPF018332.6E-4402477IPR002909IPT domain
Gene3DG3DSA:2.60.40.102.7E-4403477IPR013783Immunoglobulin-like fold
PfamPF127961.5E-7584662IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.837585696IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-18585697IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-19586696IPR020683Ankyrin repeat-containing domain
CDDcd002041.48E-14591694No hitNo description
SMARTSM002482900602631IPR002110Ankyrin repeat
PROSITE profilePS500888.63602634IPR002110Ankyrin repeat
PROSITE profilePS5008811.22635667IPR002110Ankyrin repeat
SMARTSM002480.0029635664IPR002110Ankyrin repeat
SuperFamilySSF525408.23E-8810860IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.51810832IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.73811840IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024813831IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092833855IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.395834858IPR000048IQ motif, EF-hand binding site
PfamPF006124.4E-4836855IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MVDRGSFGFI SPPQLDMEQL LSEAQHRWLR PAEICEILQN YHKFHIASES PTRPASGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH EKLKVGSVDV LHCYYAHGEG NENFQRRCYW  120
MLEQDLMHIV FVHYLEVKGN RTSIGMKENN SNSVNGTASV NIDSTASPTS TLSSLCEDAD  180
TGDSHQASSV LRASSEPQTG NRYGWTPAPG MRNVSQVHGN RVRESDSQRL VDVRAWDAIG  240
NSVTRYHDQP YCNNLLTQMQ PSNTDSMLVE ENTDKGGRLK AEHIRNPLQT QLNWQQNAQY  300
NFETFSSLLG SENQQPFGIS YQAPPSSMES EFIPVKKSLL RSEESLKKVD SFSRWASKEL  360
GEMEDLQMQS SRGDIAWTTV ECETAAAGIS LSPSLSEDQR FTIVDFWPKC AQTDAEVEVM  420
VIGTFLLSPQ EVTKYNWSCM FGEVEVPAEI LVDGVLCCHA PPHTAGHVPF YVTCSNRFAC  480
SEVREFDFLS GSTQKIDATD VYGTYTNEAS LQLRFEKMLA HRNFVHEHHI FKGVGEKRRK  540
ISKIMSLKEE KEYLLPGTYQ RDSTKQEPKE QLFREQSEEE LYIWLIHKVT EEGKGPNILD  600
EDGQGILHFV AALGYDWAIK PMLAAGVNIN FRDANGWSAL HWAAFSGREE TVAVLVSLGA  660
DAGALTDPSP ELPLGKTAAD LAYANGHRGI SGFLAESSLT SYLEKLTVDS KENSPANSSG  720
AKAVQTVSER TAAPMSYGDV PEKLSLKDSL TAVRNATQAA DRLHQVFRMQ SFQRKQLSDI  780
GDDDKIDISD KLAVSFATLK TKNLGQGDVS LSSAATHIQK KYRGWKKRKE FLLIRQRIVK  840
IQAHVRGHQV RKQYRTVIWS VGLLEKIILR WRRKGNGLRG FKRNAVAKTV EPEPPVSAIC  900
PTIPQEDEYD YLKEGRKQTE ERLEKALTRV KSMVQYPEAR DQYRRLLTVV EGFRENEASS  960
SASINNKEED EVNCEEDEFI DIDSLLNDDT LMMSISP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap487754
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878491.10.0calmodulin-binding transcription activator 1 isoform X4
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLD7M2340.0D7M234_ARALL; Calmodulin-binding transcription activator 1
STRINGfgenesh2_kg.6__888__AT5G09410.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein