PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487432
Common NameARALYDRAFT_487432
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 276aa    MW: 30629.9 Da    PI: 7.0494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487432genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3110.86.1e-3545157199
             EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
             f+k ltpsdv+k++rlv+pk++ae++               +++e+++ l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++++++
  487432  45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssaatdTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDS 147
             99**********************************99996667899**************************************************988899 PP

             E..EEEEE-S CS
      B3  90 felvvkvfrk 99 
             ++l+++++r+
  487432 148 RRLFIGWRRR 157
             99******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-4141168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-3143157IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-2844148No hitNo description
PROSITE profilePS5086314.57945158IPR003340B3 DNA binding domain
SMARTSM010193.4E-2745158IPR003340B3 DNA binding domain
PfamPF023623.3E-3245157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQQQH RHTTDTTETT TTATWLHDDL KESLFEKSLT PSDVGKLNRL  60
VIPKQHAEKY FPLNAVVVSS AATDTSSSEK GMLLSFEDES GKSWRFRYSY WNSSQSYVLT  120
KGWSRFVKDK QLDPGDVVFF QRHRSDSRRL FIGWRRRGQG SSSAAATNSA VNMSSMGALS  180
YHQIHATSNY SNPPSHSEYS HYGAAVATAA ETHSTPSSSV VGSSRTVRLF GVDLECQMDE  240
NDGDDSVTAA ATTVDLPMVT TAKTCTIITL ILIIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-52411574113B3 domain-containing transcription factor NGA1
5os9_B4e-52411574113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap487432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876020.10.0B3 domain-containing protein At5g06250 isoform X1
SwissprotQ9FNI31e-164Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLD7LZ540.0D7LZ54_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__566__AT5G06250.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-135B3 family protein