PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486704
Common NameARALYDRAFT_486704
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 305aa    MW: 34577.6 Da    PI: 8.8518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486704genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31062e-3323128199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+kv tpsdv+k++rlv+pk++ae++        ++++++  l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d+ ++ +l++ +
  486704  23 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstTNDNNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSGNKDKLYIDW 125
             89***************************9999455568889************************************************99888999***** PP

             E-S CS
      B3  97 frk 99 
             +r+
  486704 126 RRR 128
             998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-4312134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3220131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-2621117No hitNo description
PROSITE profilePS5086314.66323129IPR003340B3 DNA binding domain
SMARTSM010191.0E-2523129IPR003340B3 DNA binding domain
PfamPF023621.2E-3023128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDNN  60
KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRDSGNKDK  120
LYIDWRRRPK IPDHHHHHHQ FAGAMFPRFY TFPHPQMPTN YESHNLYHRF HQRDLGIGYY  180
VRSMERSNPT AVIESVPVMM QRRAQVASMA SRGEKRLRLF GVDMECGGGG GGGGSVNSTE  240
EESSSSGGSM PRGGVSMVGA GSLLQLRLVS SDDESLVAME AASLEDHHFF TKKGKSSLSF  300
DLDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-64181313116B3 domain-containing transcription factor NGA1
5os9_B6e-64181313116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386420.0AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBankBT0258660.0BT025866.1 Arabidopsis thaliana At3g61970 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191756.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9M2680.0NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLD7LSR40.0D7LSR4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2696__AT3G61970.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.10.0B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]