PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486700
Common NameARALYDRAFT_486700
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 358aa    MW: 40799.1 Da    PI: 6.61
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486700genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14176226154
             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
             +r +h ++Er+RR+++N+ ++ Lr llP++   + ++ + a+i+  A++Y+k L
  486700 176 QRINHIAVERNRRRQMNEHINSLRALLPPS---YIQRGDQASIVGGAINYVKVL 226
             699***************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-11174231No hitNo description
SuperFamilySSF474591.7E-17174256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13177241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKRFQGHINP CFFDRKPDVR SLEVQGFAEA QSFAFKEEEE ESLQDTVPFL QMLQSEDPSS  60
FFSIKEPNFL TLLSLQTLKE PWELESFPES DSPRQSETNC FYQKPSMEGA NQALSSQEPF  120
LSQAIMTLPS STSSPLTANS RRKRKINHLL PQEMTREKRK RRKTKPSKNI EEIENQRINH  180
IAVERNRRRQ MNEHINSLRA LLPPSYIQRG DQASIVGGAI NYVKVLEQII QSLESQKRTQ  240
QESSEVVENA INHLSGISSN ALWTTQEDQT YIPKIEATVI QNHVSLKVQC PKKQGQLLKG  300
IISLEKLKLT VLHLNITTSS HSSVSYSFNL KMEDECELES ADEITAAVHQ IFDIPTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142162KRKINHLLPQEMTREKRKRRK
2157162KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap486700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304810.0AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185270.0AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankBT0052980.0BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880824.10.0transcription factor bHLH67
SwissprotQ700E40.0BH067_ARATH; Transcription factor bHLH67
TrEMBLD7LSR10.0D7LSR1_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.5__2692__AT3G61950.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]