PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 486271 | ||||||||
Common Name | ARALYDRAFT_486271, ASL16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23846.2 Da PI: 6.3027 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.7 | 4.5e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkCak+Cv+apyf++eq +++fa++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+++l+ael+ lk++ 486271 11 PCGACKFLRRKCAKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVANLQAELEILKQQ 111 7*************************89*********************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.29 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-36 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL 60 PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVAN LQAELEILKQ QAAQSMIFAD 120 SPTSENPNSY YGDTTKAPCH HDLQNIYYHQ DQSHLGYQTG SSGTVQHGDA TESSYHNETS 180 SGIGEFSIYS DLEQHLNTFN QDHLKELQSA SFGYISFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 2 | 106 | 2 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 2 | 106 | 2 | 105 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 486271 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473849 | 0.0 | AB473849.1 Arabidopsis thaliana ASL16 mRNA for ASYMMETRIC LEAVES2-like 16 protein, complete cds. | |||
GenBank | AF447893 | 0.0 | AF447893.1 Arabidopsis thaliana LOB DOMAIN 29 (LBD29) mRNA, complete cds. | |||
GenBank | BT025282 | 0.0 | BT025282.1 Arabidopsis thaliana At3g58190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882013.1 | 1e-160 | LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 1e-148 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | D7LW12 | 1e-159 | D7LW12_ARALL; Lateral organ boundaries-domain 29, lob domain-containing protein 29 | ||||
STRING | fgenesh2_kg.5__2263__AT3G58190.1 | 1e-160 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-149 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | 486271 |
Entrez Gene | 9312530 |
Publications ? help Back to Top | |||
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