PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

486233

Common Name

ARALYDRAFT_486233

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 440aa MW: 47884.9 Da PI: 6.3793

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
486233	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	214	240	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + 486233 214 SHSLAERARREKINARMKLLQELVPGC 240 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.31E-5	208	244	No hit	No description
SuperFamily	SSF47459	3.82E-11	210	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.56	210	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-11	214	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-5	214	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-11	300	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.82E-11	300	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDLTGGFGAR SGGIGPCREP IGLESLHLGD EFRQLVTTLP PENAGGSFTA LLELPPTQAV 60 ELLHFTDSSS SQVAAVTGIG GENAPPLHSF GGTLAFPSNS VLMERAARFS VIATEQQNGN 120 VSGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPSQN NRNGKRKDFE 180 KKVKSSTKKN KSSEENEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC 240 DKGTDFGGKI KIKVCFGVHL LMISGKKAVN FLWKVSCEDL IDCSFNPLGF RLTRHSLAAS 300 FTIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNG 360 TPMQLAWPHQ AIETEQSFHH RQLPPPPTQQ WPFDGLNQPV WGREEDQADG NDNSNLMAVS 420 ENVMVASANL HPNQVKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDLTGGFGAR SGGIGPCREP IGLESLHLGD EFRQLVTTLP PENAGGSFTA LLELPPTQAV  60
ELLHFTDSSS SQVAAVTGIG GENAPPLHSF GGTLAFPSNS VLMERAARFS VIATEQQNGN  120
VSGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPSQN NRNGKRKDFE  180
KKVKSSTKKN KSSEENEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC  240
DKGTDFGGKI KIKVCFGVHL LMISGKKAVN FLWKVSCEDL IDCSFNPLGF RLTRHSLAAS  300
FTIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNG  360
TPMQLAWPHQ AIETEQSFHH RQLPPPPTQQ WPFDGLNQPV WGREEDQADG NDNSNLMAVS  420
ENVMVASANL HPNQVKMEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	486233

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488593	0.0	AF488593.1 Arabidopsis thaliana clone bHLH060 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY139773	0.0	AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBank	BT003037	0.0	BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020881292.1	0.0	LOW QUALITY PROTEIN: transcription factor bHLH60
Swissprot	Q3EAI1	0.0	BH060_ARATH; Transcription factor bHLH60
TrEMBL	D7LVX0	0.0	D7LVX0_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.5__2225__AT3G57800.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	486233
Entrez Gene	9314242

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]