PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486217
Common NameARALYDRAFT_486217
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 385aa    MW: 43499.3 Da    PI: 6.8902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486217genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05218237120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              ++Cp C k+F+r  n++ H+
   486217 218 FSCPVCFKTFNRYNNMQMHM 237
              89*****************9 PP
2zf-C2H214.40.00011302324123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C +Cgk F  + + ++H +++
   486217 302 FMCRKCGKAFAVRGDWRTHEKNC 324
              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-6218237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64218245IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-6284322No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5298322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808302322IPR007087Zinc finger, C2H2
SMARTSM0035549302322IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPLPLPPP SSFFFFPQSG DLRRPPPPPT  60
PPPSPPLREA LPLLSLSPAN KQQDHHHNHD HLIQEPPSTS MDVDYDHHHQ DDHHNLEDDD  120
HDVTVALHIG LPSPSAHEMA SLLMMSSSSS SSRTTHHHDD MNHKKDLDHD YSHGATGGGE  180
DDDEDSVGVD GGCRISRLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH  240
GSQYRKGPES LRGTQPTGML RLPCYCCAPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK  300
PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG NGHGAYGIDG  360
FDEEDEPASE VEQLDNDHES MQSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486217
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882489.10.0zinc finger protein WIP2
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLD7LVV40.0D7LVV4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2209__AT3G57670.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.10.0C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]