PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 486116 | ||||||||
Common Name | ARALYDRAFT_486116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26217.9 Da PI: 7.1022 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 3.9e-09 | 50 | 96 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR++iN +++Lr ll + K +Ka+ L k+v+ +++L 486116 50 RNHKEAERKRREKINFHLNKLRNLLSCN-----SKTDKATLLAKVVQRVREL 96 58***********************997.....7************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.17 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.21E-8 | 50 | 99 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-11 | 50 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-11 | 50 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-7 | 50 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-8 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.7E-4 | 134 | 203 | No hit | No description |
CDD | cd04873 | 0.00214 | 135 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQAEISDQIF YSFLTGGLCA SSTSSTTTSL FSSFAIEDKV AEDKALASLR NHKEAERKRR 60 EKINFHLNKL RNLLSCNSKT DKATLLAKVV QRVRELKQQT LEITDETLPS ETDEISVLNF 120 EDCSNDDGRR IIFKVSFCCE DRPDLLQDLM ETLKYLQMET LFAEMTTVGG RTRNVLVVAA 180 DKEHHGVQSV NFLQNALKSL LERSSKSVMM GHGGGGEERL KRRRALDHII MV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 60 | ERKRRE |
2 | 56 | 61 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 486116 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL390921 | 0.0 | AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002878108.1 | 1e-171 | putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 1e-131 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | D7LVJ6 | 1e-169 | D7LVJ6_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.5__2108__AT3G56770.1 | 1e-170 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 1e-131 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 486116 |
Entrez Gene | 9314176 |
Publications ? help Back to Top | |||
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