PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485421
Common NameARALYDRAFT_485421
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 287aa    MW: 31294.8 Da    PI: 9.6308
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485421genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822201.33e-62131531145
  DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssal 103
             +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DG tyrkgs+p+         + +  +ss+q+s++ssa+
  485421  13 AATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGSTYRKGSRPT---------EATPLCSSIQLSPQSSAF 106
             5799************************************************************************.........5667899999999999** PP

  DUF822 104 aspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145
             +sp++sy+asp+sss+psp+++d+i+++ +     + l+p+l++l++
  485421 107 QSPIPSYQASPSSSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 153
             ************************98764456666888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.1E-5915151IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005773Cellular Componentvacuole
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTASGGGEGE STAATGRMPT WKERENNKRR ERRRRAIAAK IFTGLRSQGN YKLPKHCDNN  60
EVLKALCLEA GWIVHEDGST YRKGSRPTEA TPLCSSIQLS PQSSAFQSPI PSYQASPSSS  120
SYPSPTRFDH IPNRFDPNQS STYLIPYLQN LASSGNLAPL RISNSAPVTP PISSPRGSNP  180
RLSRWQSSNF PVSAPSSPTR RLHHYTSIPE CDESDVSTVD SCRWGNFQPG NVSQTCPPSP  240
TFNLVGKSVI SGGGDLSVKP WEGEKIHDVG IDDLELTLGN NTKRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-241787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-241787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-241787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-241787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap485421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498621e-180AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3.
GenBankAL1329791e-180AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankBT0024521e-180BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBankBT0063101e-180BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.
GenBankCP0026861e-180CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882382.10.0BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-153BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLD7LTI10.0D7LTI1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__1413__AT3G50750.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144671721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-138BES1/BZR1 homolog 1