PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 485380 | ||||||||
Common Name | ARALYDRAFT_485380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17049.5 Da PI: 10.331 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g 485380 21 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 69 8*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-36 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-21 | 21 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.56E-27 | 21 | 79 | No hit | No description |
Pfam | PF00847 | 1.1E-11 | 21 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDAGVAVKVD VVGARKRERP FKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY 60 DTAVFYLRGP TATLNFPELL PCTSTEDMSA ATIRKKATEV GAQVDAIGTT VVQNNKRRRV 120 FSQKRDFGGG LLELVDLNKL PDPENLDDDL VGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 21 | 84 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 119 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00401 | DAP | Transfer from AT3G50260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 485380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132976 | 0.0 | AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1. | |||
GenBank | AY045579 | 0.0 | AY045579.1 Arabidopsis thaliana AT3g50260/F11C1_100 mRNA, complete cds. | |||
GenBank | AY093792 | 0.0 | AY093792.1 Arabidopsis thaliana AT3g50260/F11C1_100 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020880975.1 | 1e-109 | ethylene-responsive transcription factor ERF011 | ||||
Swissprot | Q9SNE1 | 1e-104 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | D7LT40 | 1e-107 | D7LT40_ARALL; ATERF#011/CEJ1 | ||||
STRING | fgenesh2_kg.5__1372__AT3G50260.1 | 1e-108 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 5e-99 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | 485380 |
Entrez Gene | 9313806 |
Publications ? help Back to Top | |||
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