PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

485129

Common Name

ARALYDRAFT_485129

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 237aa MW: 26233.4 Da PI: 6.6356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
485129	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.7e-05	28	76	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r ++ rEr R+++N+ f eL + l + ++ Ka+iL +A++++k+ 485129 28 KRINKAVRERLKREHLNELFIELADTLELN----QQNSGKASILGEATRFLKD 76 689999********************97....56677899***999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.60E-5	25	76	No hit	No description
SuperFamily	SSF47459	1.96E-11	26	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-7	27	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.731	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0023	33	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.20.58.70	8.2E-4	82	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MASKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN 60 SGKASILGEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT EKNELKEETS VLETEISKLQ 120 NEIKARASQS KPDLNTSPAP EYHHHHQHPE LASQFPGLPI FQGPGFQQSA ATFPPPATVL 180 VLPIQPDLQT QDISEMTQAQ PLMYNTSNVS KPCPRYASAA DSWSSRLLGE RLKASE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	485129

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY080786	0.0	AY080786.1 Arabidopsis thaliana unknown protein (At3g47640) mRNA, complete cds.
GenBank	AY114018	0.0	AY114018.1 Arabidopsis thaliana unknown protein (At3g47640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880467.1	1e-172	transcription factor bHLH47
Swissprot	Q9SN74	1e-153	BH047_ARATH; Transcription factor bHLH47
TrEMBL	D7LRE1	1e-173	D7LRE1_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.5__1121__AT3G47640.1	1e-174	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-155	bHLH family protein

Link Out ? help Back to Top
Phytozome	485129
Entrez Gene	9313639

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]